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The [ current one ](https://github.com/biocore/qiita/commit/378be825d8b4d147180774606a589f9f2051909f) is outdated, causing users to encounter various errors when trying to follow the tutorial.
I will…
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Hi,
I have a dataset which I aggregated to the Class level using "tax_glom(master,taxrank=Class)". If I understand the function correctly, all OTUs which belong to the same class are grouped together…
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Hi,
I would like to request your help in creating a phyloseq object for further analysis. This is the first time am getting to use phyloseq and am eager to see some plots and perform some analysis.
My…
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Is there a way to change the stacking order in a plot_bar graph (not the legend order but the stack order)? As it is now, each stack is ordered with the factor composing the largest abundance on the b…
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These two performance measures are essential, particularly in external validation studies. Several guidelines and textbooks on clinical prediction modellling recommend them, for example:
[http://dx.d…
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This is related to https://github.com/sigmavirus24/requests-toolbelt/issues/82 - which appeared to have been fixed by 0.5.1 - but perhaps some of my installed versions are old. Installation and system…
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I hit the browse upload button to upload my .biom file and it says upload complete but nothing happens. Not sure what is going on. The only data available are the test dataset. I cannot use anything I…
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From @clozupone. Rewriting: add a way to know the sequences per sample in a meta-analysis before defining the rarefaction level.
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Subject is the basic issue. I select file I want to upload (.biom, tree file) and it says upload complete but my data is not present. Can you please help?
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When trying to save a biom table with observation metadata, i get the following error:
``` python
/Users/amnon/Python/git/heatsequer/heatsequer/experiment/io.py in savetobiom(expdat, filename, format…