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https://mp.weixin.qq.com/s/-UjKxtszsH7HxRe3Rjh7zg
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https://mp.weixin.qq.com/s/5QSOaHvz__xoMBRuljKuSg
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Hello,
I am wondering if it is possible to run TEsmall with BAM files instead of FASTQ files? Skip the trimming/mapping step and go straight to the abundance/annotation step?
Best regards,
Mari…
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https://mp.weixin.qq.com/s/qg01zt-MU9xo3bsnDHPTKg
ixxmu updated
2 years ago
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Hi kallisto contributors,
kallisto is an amazing tool for alignment of RNA-seq/scRNA-seq, i'm using kb for smart-seq2 data and got an Error when running kb count with
`kb count -i macaca_fasci…
x1han updated
2 years ago
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Can still have the "generic" genomics assay to handle assays for which we don't have a specific template, but with the addition of attributes like #158 which is WES-specific, it would be good to break…
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Hi,
As I understand it, the min_feature option can be used to avoid testing genes with none or few counts, thereby potentially increase the power of FDR.
However, there seems to be a problem wit…
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Hello,
I have been following your tutorial for Transcription factor activity inference in bulk RNA-seq but wanted to use the consensus analysis. I am using the Dorothea database, as in the tutori…
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https://mp.weixin.qq.com/s/EnHNOHGEkOmsiU2hkJe1dw
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single cell data is likely not very informative per cell unless working with smart-seq datasets. With 10x genomics data it makes more sense to call editing events across multiple related cells. Given …