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See related ticket: https://github.com/monarch-initiative/mondo/issues/703
There are a number of terms in Mondo that we merge into one term, and I have some questions about some of them:
(Note, in t…
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If unpublished items (e.g., unpublished cancer research list page; unpublished video) are added to a (published) CTHP, users who are not logged into the CMS should not see the card (which links to an …
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I have been looking at the Oncotree resource and noticed that MONDO provides xrefs to it. Oncotree is organized in a way that at the top level, it lists tissues (e.g., LUNG, PANCREAS, etc.) and all de…
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Hi, thank you for developing a nice tool!
I've tried to use your Ikarus in my single-cell RNAseq datasets, including _in vitro_ cultured normal cells and _in vivo_ developed tumor cells.
It is m…
wgsim updated
3 weeks ago
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Currently, once you select a cell type from the cell type wheel, its marker gene heatmap will stay displayed even if you browse different parts of the wheel or go back to previous display and will onl…
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We currently use the AMP/ASCO/CAP and ACMG (Mendelian cancer predisposition) guidelines to harmonize the somatic and germline variant classification, respectively. Unfortunately, both the ACMG and AMP…
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- Create Azure Storage account for saving Cancer Genomics data
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My document structure has a nested field inside of a nested field.
I have a nested field primary_diagnoses and inside that another nested field bio_markers
E.g doc
```
{
"primary_diagnoses"…
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Morphology is defined as an element of bodyStructure (see https://build.fhir.org/bodystructure.html) but, I assume, we don't want to put diagnosis in the bodyStructure element. Therefore we came acros…
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Hello!
I have a question regarding the vcf that the **get** command outputs in comparison to the ***.txt***. I've noticed that I had two variants in the txt file both labelled as PASS but only one …