friend1ws nanomonsv issues

friend1ws / nanomonsv

SV detection tool for nanopore sequence reads

GNU General Public License v3.0

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issues

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definition of duplication

#67 charliechen912ilovbash opened 4 weeks ago
0
unrecognized arguments - fasta file

#66 setshabaTaukobong opened 2 months ago
10
Convert reference sequences to upper cases & add simple repeats

#65 yos-sk closed 2 months ago
0
the use of CHM13 reference for SV detection

#64 charliechen912ilovbash opened 3 months ago
3
handling the lower case of reference sequences

#63 yos-sk closed 3 months ago
0
Output of get command

#62 eesiribloom opened 3 months ago
0
VCF file annotation problem

#61 skeremaydin opened 4 months ago
0
nanomonsv.parse - ERROR - query end inconsistent!! m84039_230327_233730_s2/157488965/ccs: 909 != 628

#60 skeremaydin opened 4 months ago
0
module not found: annot_utils

#59 bakeronit closed 5 months ago
2
installation via bioconda broken

#58 ptrebert opened 7 months ago
0
Simulated data used for the paper

#57 waltergallegog opened 8 months ago
0
1 standalone ins refinement

#56 waltergallegog closed 8 months ago
1
Insertion detected when using mafft and not when using racon

#55 waltergallegog opened 9 months ago
1
incorrect supporting read counts and VAF for inversions

#54 abelhj opened 9 months ago
0
[Question] How are POS, LEN and SEQ of insertions determined

#53 waltergallegog closed 9 months ago
2
Control panel aligned to T2T 2.0 reference

#52 tbenavi1 opened 10 months ago
1
ERROR - query end inconsistent!!

#51 xwBio closed 10 months ago
1
Recomanded settings for Dorado basecaller

#50 zhengzhenxian closed 10 months ago
2
Updated version of racon

#49 RenzoTale88 opened 11 months ago
1
simple repeat filtered result is not included in vcf output

#48 charliechen912ilovbash closed 10 months ago
4
local variable 'is_insert_type' referenced before assignment

#47 charliechen912ilovbash closed 11 months ago
1
intra-chromosomal translocation vs deletion/inversion

#46 charliechen912ilovbash closed 11 months ago
1
ERROR - query end inconsistent when running parse

#45 asherbryant opened 11 months ago
7
Modify print_bedpe_junction function in parse.py

#44 yos-sk closed 11 months ago
0
How to Calculate Recall and Precision

#43 XuYan000131 opened 11 months ago
0
TypeError: 'NoneType' object is not subscriptable

#42 myxotheles closed 11 months ago
1
IndexError: list index out of range

#41 tbenavi1 closed 10 months ago
6
Update README.md

#40 friend1ws closed 1 year ago
0
Signal 6 (SIGABRT) when running get

#39 asherbryant closed 11 months ago
10
CRAM support

#38 willhooper closed 1 year ago
6
SIGILL: 4 error

#37 MartinezRuiz-Carlos closed 1 year ago
3
python: src/memory.c:244: parasail_result_new_trace: Assertion `a > 0' failed.

#36 charliechen912ilovbash closed 1 year ago
3
Question over code

#35 RenzoTale88 closed 1 year ago
3
Fix typos in README.md

#34 kojix2 closed 1 year ago
0
Exit with help if no command line arguments.

#33 kojix2 closed 1 year ago
1
nanomonsv get with `--single_bnd` fails

#32 mooomooo131 closed 1 year ago
1
End position occurs before start position

#31 zhemingfan opened 1 year ago
4
Run time and disk space required in version 0.5

#30 waltergallegog closed 1 year ago
3
Expected deletion in mock sample not being called

#29 zhemingfan closed 10 months ago
1
Bug Report: Input not found with symlinked input BAMs

#28 zhemingfan closed 1 year ago
1
circular DNA in output

#27 charliechen912ilovbash closed 1 year ago
1
More information/benchmarks on --processes for get

#26 awgymer opened 1 year ago
0
about compare with short read SV in paper

#25 charliechen912ilovbash closed 1 year ago
4
nanomonsv insert_classify: Executable does not exist: minimap2

#24 charliechen912ilovbash closed 1 year ago
1
Running nanomonsv with WGS samples

#23 waltergallegog closed 2 years ago
2
TypeError: NoneType object is not subscriptable, if cigarstring == *

#22 Simarpreet-Kaur-Bhurji closed 1 year ago
3
More than 1 controls?

#21 AhmedArslan closed 2 years ago
3
position of insertion

#20 charliechen912ilovbash closed 2 years ago
1
supporting read ID not included in output

#19 charliechen912ilovbash closed 2 years ago
9
sup read seq in vcf

#18 charliechen912ilovbash closed 11 months ago
0