-
Using gibhub version of Deblur as of ~Oct 12, there are several inconsistencies with documentation:
- `--help` says `--trim` is the option to set trim length (I'm assuming this is the `-t` mentioned i…
-
Hi,
I have run the online deblur process of this paper, but the output is incorrect.
Which the input data type is suitable, 3 channels of RGB?
Or are there anything I should attach importance to it…
-
Despite the [docs](https://github.com/biocore/deblur/blob/master/deblur/workflow.py#L391-L400), they are not [used](https://github.com/biocore/deblur/blob/master/deblur/workflow.py#L464-L466).
Eve…
-
sortmerna does not run on barnacle when obtained from biocore
it needs glibc 2.16
one workaround is to change to install instructions to use bioconda instead
-
To add to conda install:
matplotlib
pandas
scipy
ipython
click
-
A more descriptive name would be helpful here.
-
There has been an issue #523 on multi-label problem. In my case, I'm trying to implement an image-deblur network. For deblurring, I have to give image as label, so it's more than multi-labeling.
My w…
-
mafft failes (only 1 sequence to align)
so a samples containing only 1000 identical reads will fail in the mafft stage
-
every X% (default 5) of samples (and also indexing of GG and splitting...)
have a flag for X, 0 if supress
-
the people want taxonomy in their biom table
we can:
1. supply an additional script (using qiime rdp/other option?) to add taxonomy
2. add this script as an optional step in the pipeline (and have it …