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biocore
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deblur
Deblur is a greedy deconvolution algorithm based on known read error profiles.
BSD 3-Clause "New" or "Revised" License
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MAINT: replace deprecated `.warn()` method
#219
valentynbez
closed
1 year ago
2
Fixed stand-alone version of multiple-seq-alignment
#218
litwinowicz
opened
1 year ago
0
`logging` `warn` method deprecation fix
#217
valentynbez
closed
2 years ago
1
add test data to setup.py
#216
antgonza
closed
2 years ago
0
1.1.1
#215
antgonza
closed
2 years ago
0
Update click
#214
antgonza
closed
2 years ago
0
Update vsearch
#213
antgonza
closed
2 years ago
0
Update mafft
#212
antgonza
closed
2 years ago
0
Python 3.8
#211
antgonza
closed
2 years ago
0
finish mv to github actions
#210
antgonza
closed
2 years ago
1
indexdb_rna not found
#209
Jigyasa3
opened
2 years ago
6
support click 8
#208
thermokarst
opened
3 years ago
0
Deblur installation error
#207
EmmettPeng
closed
3 years ago
5
Question about using Deblur in meta analysis
#206
anna-schrecengost
closed
3 years ago
1
Can you recommend some reference databases (Positive mode) for ITS and 18S sequences?
#205
Listen-Lii
opened
3 years ago
8
Is there an equivalent deblur-stats output in the stand alone version?
#204
AnalissaFSarno
closed
3 years ago
4
Novaseq support
#203
wangjiawen2013
closed
4 years ago
1
DEP: update mafft pin
#202
thermokarst
closed
2 years ago
5
Crash after saving biom table and attempting to remove artifacts
#201
nameerbaker
opened
4 years ago
0
[MNT] Align output file name of build_biom_table with workflow
#200
suzuki-shm
opened
5 years ago
0
[DEV] Change output suffix of deblur_seqs command to align with build_biom_table
#199
suzuki-shm
opened
5 years ago
0
Align database related behavior in build_biom_table with workflow
#198
suzuki-shm
opened
5 years ago
0
[BUG] Bug fix in parameter name of remove-chimeras-denovo
#197
suzuki-shm
opened
5 years ago
1
Whether deblur trim the read length with multipile sequence alignment?
#196
biofuture
opened
5 years ago
9
[DOC] Fix docs about biom format
#195
suzuki-shm
opened
5 years ago
1
[BUG] Replace dash in fasta file output of debular command
#194
suzuki-shm
opened
5 years ago
1
[BUG] Bug fix to use multiple-seq-alignment command
#193
suzuki-shm
opened
5 years ago
1
[BUG] Bug fix to use trim command
#192
suzuki-shm
opened
5 years ago
1
Update README.md to include numpy version
#191
adswafford
closed
5 years ago
1
bug Mac, error message
#190
rderelle
closed
5 years ago
1
DO NOT MERGE
#189
wasade
opened
5 years ago
1
1.1.0-dev
#188
antgonza
closed
5 years ago
1
Restrict vsearch, fix coverage, make numpy constraint concordant with skbio
#187
wasade
closed
5 years ago
8
fix-readme-and-coveralls
#186
antgonza
closed
2 years ago
0
always-use-pip-to-install
#185
antgonza
closed
5 years ago
1
fix #179 + changing versions for release
#184
antgonza
closed
5 years ago
3
"ERROR ...: Problem running vsearch dereplication on file"
#183
bk70545
opened
6 years ago
1
Not sure where counts are going for dominant sequence
#182
polypay123
closed
6 years ago
1
Is it possible to turn off chimera checking?
#181
polypay123
opened
6 years ago
4
Derivation of error profile
#180
polypay123
closed
5 years ago
2
fix seq_i, seq_j type
#179
amnona
closed
5 years ago
4
Indels aren't calculated correctly
#178
MichaelRade
closed
5 years ago
6
BUGFIX: 1E9 as float, and fixing the unit tests
#177
amnona
closed
6 years ago
3
Deblur workflow output
#176
bishnuadhikari
closed
5 years ago
14
Failure to write BIOM file - OSError: Unable to create file
#175
feargalr
closed
5 years ago
1
Casting 1E9 to int to fix issue biocore/deblur#172
#174
gsmashd
closed
5 years ago
1
DEBUG: Manually triggering travis build
#173
thermokarst
closed
6 years ago
3
convert float to int
#172
jtremblay
closed
5 years ago
3
illumina 1.9 support?
#171
jtremblay
closed
5 years ago
1
in preparation of release version 1.0.4 I commented in the changelog …
#170
sjanssen2
closed
6 years ago
2
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