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qiime2
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q2cli
Command line interface for QIIME 2
BSD 3-Clause "New" or "Revised" License
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get_config_from_file -> load_config_from_file
#341
Oddant1
closed
1 week ago
0
Update qiime info to show parallel config info
#340
Oddant1
opened
2 weeks ago
2
Add plugin level citations to the action --citation flag
#339
Oddant1
closed
6 days ago
0
Use ConfigParser instead of SafeConfigParser
#338
athos-ribeiro
closed
1 month ago
1
BUG: Update tests to use ReplayNamespaces not NamespaceCollection
#337
Oddant1
closed
2 months ago
1
`--citations` should report plugin citations when called on an action
#336
gregcaporaso
closed
6 days ago
1
TEST: new gha for language updates
#335
lizgehret
closed
3 months ago
1
PluginManager intialized by importing Usage driver
#334
ebolyen
opened
3 months ago
0
Used cache does not get set early enough
#333
Oddant1
closed
1 month ago
1
Put --use-cache on all actions
#332
Oddant1
closed
1 month ago
3
Use New Key Validator
#331
Oddant1
closed
3 months ago
0
IMP: update metavars for jobs, threads primitive types
#330
colinvwood
closed
5 months ago
1
BUG: missing metadata column error not raised correctly
#329
lizgehret
closed
6 months ago
1
TST: fix roundtrip on /bin/sh
#328
ebolyen
closed
7 months ago
2
BUG: CLI says missing metdata-file when a metadata column is not passed in.
#327
cherman2
closed
6 months ago
2
MAINT: removes outdated commands from import tools
#326
hagenjp
closed
8 months ago
0
update replay supplement tests for nested zipfile directory
#325
colinvwood
closed
7 months ago
6
IMP: tools import and cache-import now have validate_level
#324
ebolyen
closed
7 months ago
5
add usage driver support for replaying result collections
#323
colinvwood
closed
7 months ago
1
Expand ~
#322
Oddant1
closed
8 months ago
3
improve error message from `qiime tools replay-proveance` on invalid input file path
#321
gregcaporaso
opened
9 months ago
2
Import to cache take2
#320
Oddant1
closed
9 months ago
1
Make things aware of other-plugin
#319
Oddant1
closed
9 months ago
1
Add qiime tools cache-import
#318
Oddant1
closed
8 months ago
3
enable direct-to-cache imports
#317
gregcaporaso
closed
8 months ago
2
BUG: missing changes to md_out_dir param name change
#316
lizgehret
closed
9 months ago
0
Revert "BUG: missing changes to md_out_dir param name change"
#315
lizgehret
closed
9 months ago
0
Release 2023.9
#314
lizgehret
closed
9 months ago
0
Revert 312 md out dir param
#313
lizgehret
closed
9 months ago
0
BUG: missing changes to md_out_dir param name change
#312
lizgehret
closed
9 months ago
0
CI:updates to ci-dev workflow
#311
hagenjp
closed
9 months ago
0
Provenance-Replay cannot handle cached artifacts
#310
Oddant1
opened
10 months ago
0
NEW: Integrate provenance lib into cli
#309
colinvwood
closed
9 months ago
4
De-Facto keyed collections do not like paths starting with ~
#308
Oddant1
closed
8 months ago
0
MAINT: Ensure we use the proper cache when no_recycle set
#307
Oddant1
closed
10 months ago
0
Hide actions that start with _ and have flag to show them
#306
Oddant1
closed
10 months ago
3
IMP: rename init_result_collection -> init_artifact_collection
#305
lizgehret
closed
10 months ago
0
IMP: ensure ResultCollection keys are strings
#304
Oddant1
closed
1 year ago
0
IMP: Fixes here to go along with parallel framework changes
#303
Oddant1
closed
11 months ago
0
NEW: adds ResultCollection to Usage Driver
#302
lizgehret
closed
11 months ago
1
q2cli should hide actions with names that start with `_`
#301
gregcaporaso
closed
10 months ago
2
2023.5 patch fixes
#300
ebolyen
closed
1 year ago
1
Need to unpack tuple
#299
Oddant1
closed
1 year ago
0
`qiime tools view`: Snap-installed browers can't open `/tmp`
#298
ebolyen
opened
1 year ago
2
BUG: recycle mixup between default cache and output `cache:key`
#297
ebolyen
closed
9 months ago
5
CI: add additional tests in commands section
#296
colinvwood
closed
11 months ago
0
Some cleanup
#295
Oddant1
closed
1 year ago
1
Parsl
#294
Oddant1
closed
1 year ago
1
Pipeline resumption
#293
Oddant1
closed
1 year ago
1
Pipeline resumption
#292
Oddant1
closed
1 year ago
1
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