-
The vignette immediately launches into an analysis but I would like to see some explanation of RNA-seq abundance summaries. Should counts, FPKM, TPM or something else be provided? What should definite…
-
Hi,
Can I ask what is the foundamental difference between **tissue-specific gene enrichment** and **TWAS** (http://gusevlab.org/projects/fusion/)?
Thanks!
best regards,
Jie HUANG, MD MPH …
-
Action item from GOC meeting Oct 2017 + May 2018 meeting
Aim to have a proposal for the April 2018 meeting.
-
Hi Tim,
I am currently unable to successfully run the CallPeaks function with my own data, or with the test 10k PBMC data as per the Multiome Vignette. Your help would be much appreciated.
Rega…
-
IDG sent me some info about workshops they’ve done that they have recordings for. It’s in the announcements, but they would also like them added to the training website. So adding an IDG tab to this p…
-
Dear pySCENIC team,
Firstly, I would like to thank you for developing this great application!
I have a question about intermediate step of ranking genes in the AUCell algorithm. In order to ca…
-
Hello,
Thank you very much for your tool.
I am using the gseKEGG function to test for KEGG pathway enrichment in my set of mouse genes (please see attached).
```
library(clusterProfiler)
lib…
-
Hello again! Two questions, roughly related...regarding method differences with `enrichIt()`
So just like you said, UCell is much faster. I'm having hard time getting through my script using my seu…
-
Dear Professor GuangchuangYu and team,
I have recently used the ClusterProfiler and have been so interested with how it works and the visualization site. I like to perform KEGG enrichment and GO g…
-
When running geseca (installed from [here](https://github.com/ctlab/fgsea/tree/geseca)) to do a multi-condition analysis (e.g. run on two differential expression analysis that I made) is the `E` argum…