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fgsea
Fast Gene Set Enrichment Analysis
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plotCoregulationProfileSpatial for Seurat5 object with layers
#163
csmoreno
opened
1 week ago
4
P value reproducibility
#162
jac-thom
closed
2 weeks ago
2
Understandig GESECA results
#161
Teulip
closed
1 month ago
2
Issue 150 plotCoregulationSpatial
#160
vdsukhov
closed
1 month ago
0
How to prepare pathway used for fgsea function
#159
yulchen810
closed
2 months ago
5
add rank plot for the GSEA plot
#158
person-c
closed
4 months ago
0
fora example in vignette
#157
markziemann
closed
3 months ago
1
Adding fold enrichment score to fora() output
#156
markziemann
closed
4 months ago
1
Understanding the scoreType
#155
alkurowska
closed
3 months ago
2
GSEA to discover mixed enriched terms
#154
mauritsunkel
closed
5 months ago
5
Implementation question
#153
mauritsunkel
closed
6 months ago
5
Question: Geseca output, column "size"
#152
oswaldbra12
closed
7 months ago
4
fgsea hangs forever for highly enriched pathways in the presence of repeated high scored genes
#151
guidohooiveld
opened
7 months ago
9
Support for multiple samples in plotCoregulationSpatial
#150
assaron
closed
1 month ago
0
Error in preparePathwaysAndStats
#149
TX-Xiao
closed
5 months ago
5
are there p-value calculated for each leading edge gene?
#148
Leran10
closed
9 months ago
2
Try to understand how ES is calculated
#147
ghbore
closed
9 months ago
3
Question: scaling size of spots
#146
jyoo19
closed
10 months ago
2
Non-deterministic output with seed set, `nproc = 1`, and newest version
#145
chriswzou
closed
5 months ago
3
fgsea giving identical padj values across many pathways
#144
johnse
closed
9 months ago
1
Gene filtering for FGSEA
#143
SirKuikka
opened
1 year ago
0
Prepare for upcoming Seurat v5 release
#142
Gesmira
opened
1 year ago
0
github actions test
#141
assaron
closed
1 year ago
0
How to report for enriched gene sets?
#140
Close-your-eyes
closed
1 year ago
2
minSize and maxSize
#139
ag1805x
closed
1 year ago
1
fgseaMultilevelCpp doens't seem to be installed
#138
G3N0M3
closed
5 months ago
6
Obtain per-sample expression value for a gene set
#137
PatrickMaclean
opened
1 year ago
1
GESECA: Error following tutorial: 2 arguments passed to 'cumsum' which requires 1
#136
grapefruitshark
closed
1 year ago
5
Insignificant p-values
#135
SirKuikka
closed
1 year ago
4
Question: distribution requirements of statistics
#134
kvittingseerup
closed
1 year ago
3
Error in calcGseaStatCumulativeBatch
#133
kevincjnixon
closed
1 year ago
4
Will fgsea remove the wrong gene names in the input gene list?
#132
QichenFU
closed
1 year ago
1
Which genes should I use?
#131
dekan-aleksandr
closed
1 year ago
2
Does fGSEA require minSize as well?
#130
MEladawi
closed
1 year ago
1
Stats should be named
#129
been9312
closed
1 year ago
1
Question: Understanding discrepant results when using different ranking approaches and algorithmic parameters
#128
atakanekiz
opened
1 year ago
2
Question: Visium Data and pulling out cells with high GO enrichment for a given pathway
#127
DirtyHarry80
opened
2 years ago
8
Spatial Code Error in base::colSums
#126
DirtyHarry80
closed
2 years ago
5
GESECA function not existing
#125
DirtyHarry80
closed
2 years ago
3
Question: unbalanced gene-level statistic warning
#124
TatiKarp
closed
1 year ago
7
Question: about scoreType = 'pos'
#123
noblegasss
closed
1 year ago
1
error: Value of SET_STRING_ELT() must be a 'CHARSXP' not a 'NULL' appearing when launching fgsea()
#122
klai001
closed
2 years ago
0
Use outside of R
#121
maxkfranz
opened
2 years ago
4
Questions related to fgsea algorithm
#120
lucolotto
closed
1 year ago
1
Subset of genes
#119
gjhuizing
closed
2 years ago
2
New method: Gene Set Co-Regulation Analysis (geseca)
#118
vdsukhov
closed
2 years ago
0
is there a plan to implement fast ssGSEA?
#117
Yunuuuu
closed
2 years ago
3
Citation
#116
pstew
opened
2 years ago
3
p.val threshold error in collapsePathways ()
#115
acaulier
closed
2 years ago
2
A weird result: Highly enrichement visually but p value is not significant
#114
chent5
closed
2 years ago
6
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