-
```
What steps will reproduce the problem?
1. Parse any GTF file
2. Compare gtf-to-genes start locations to GTF file
3.
What is the expected output? What do you see instead?
Start locations in gtf-to…
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- [ ] generated GTFS files
- [x] Miccolis in OSM queries
- [ ] miccolis directory
- [ ] calendar-> miccolis-parser
- [ ] timetables -> matera-gtfs
- [ ] review filters
- [ ] review builders
- [x]…
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I am able to run vcf2diploid.jar to create paternal, maternal chain. Then I tried to use these chain to create updated annotation for reference GTF/GFF files. But, I am getting the warning message.
…
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I was going through your code for calculating feature length but I see you use `exon` rather than the `gene` field of the gtf. I was trying to use this code for NOISeq so was wondering which is the ri…
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Hi
I am trying to run clipper on Drosophila data, providing a GTF instead of a species -s option.
(Cou you provide information on how to construct a species file for other model organism)
In a test …
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Hi, MGI dev group,
1. I noticed you mentioned that the new version can deal with gene_id,
在版本2.0.0中无法对只包含gene_id而没有gene_name的gene进行注释，但是在版本2.0.5中我们进行了改变，可以更新流程重新进行分析
_Originally …
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When trying to generate a map from the link "http://data.trilliumtransit.com/gtfs/mendocino-ca-us/mendocino-ca-us.zip" this error (that makes the server crash shows up):
` for (var i =…
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**Beschreibe den Fehler**
Einige route_long_name Einträge der bwgesamt/routes.txt haben überflüssige Leerzeichen und insbesondere ein laut Spezifikation unzulässiges carriage return Zeichen am Ende. …
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Hi David,
I just have a question about the mappings. From what I see in this mapping file (https://github.com/oeg-upm/gtfs-bench/blob/master/mappings/gtfs-rdb.r2rml.ttl), gtfs:zone seems to be a d…
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Hi,
I am attaching my snakemake config (yaml).
1. In TOBIAS_snakemake run how many of the tools are run from the tools of the standard TOBIAS? (when I mean tools, I mean those listed in the Wi…