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I wrote some user-centered API documentation (https://github.com/microbiomedata/NMDC_documentation/blob/main/docs/howto_guides/api_gui.md) that would be nice to see in the front facing documentation
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Release 2024.7 is scheduled to be deployed to production on: **July 29, 2024**
Upstream events:
* Freeze the version of `nmdc-schema` that will be used in this release, by: **July 19, 2024**
* …
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Previously, NMDC was using source_mat_id to collect the globally unique ID for submissions.
This is no longer required as NMDC can mint biosample identifiers. Need to update this requirement for MUTT…
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I frequently want to be able to state: I have looked in `object_source` for a matching or close concept to `subject_id` but am confident there is nothing.
How should I state this?
Can we make …
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example
JGI sequencing project id 1205892
Depends on https://github.com/microbiomedata/nmdc_automation/issues/9
aclum updated
1 month ago
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Steps:
- [x] `update-study` nmdc:sty-11-aygzgv51_updated_record_identifiers.tsv
- [x] `extract-records`
- [x] `process-records` no filesystem changes
- [x] #178
- [x] `ingest-records` nmdc:sty-11-ay…
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### Is there an existing issue for this?
- [X] I have searched the existing issues
### Current Behavior
The workflow records that are being submitted use the NMDC minted ID without appending a vers…
aclum updated
2 months ago
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Examples:
"url": "https://data.microbiomedata.org/data/nmdc:omprc-11-wk0zte27/nmdc:wfrqc-11-ztdsp758**.1.1.1**/nmdc_wfrqc-11-ztdsp758.1.1.1_filtered.fastq.gz",
Also getting written to updated_id…
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In the submission portal, some slots have compound values (agrochem_addition, roundup;5 milligram per liter;2018-06-21).
Other slots are multi valued (analysis_type, metabolome; proteome)
Clear …
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Maximum Depth should be the lower depth for JGI templates
Take the NMDC slot depth and parse out the pieces so ONLY the 2nd value is in this column of the JGI export.
(for sample types with one …