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I am running the long-read using the CHM13 reference, and found some transduction events. We have other Omics data that we are working with and I would like to know the reads which show the transducti…
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I tried but it didn't work, so therefore I explicitly would like to ask: is it possible to use `compareCluster` with `gseKEGG `(or the generic `GSEA` function), analogous to the generic `enricher` fun…
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Saw this logged during Postgres ingest:
`missing biosample:
gold:Gb0119280`
This indicates that an omics_processing (sequencing project) lists that biosample ID as input, but there is no corres…
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I propose a new UBKG model to address three separate requests.
# Requests
1. The UBKG should be the source of truth for the assay metadata currently managed in the value object of the soft assay t…
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Automation and coordination with JGI & EMSL User Facilities
The JGI and EMSL are key partners for the NMDC because they support the environmental research
community, have established processes for col…
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Ticket to track issues with neon raw data, a subset of neon raw data across soil, benthic, and surface water samples appears to not be formatted correctly in such a way that interleaving produces the …
aclum updated
3 months ago
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aclum updated
5 months ago
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In [`fdc61ca`](https://github.com/zhanxw/upptime/commit/fdc61ca30cc863e331476d2bb76ea1912b0710c6
), Omics Rocks (https://omics.rocks) was **down**:
- HTTP code: 0
- Response time: 0 ms
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There are 40 documents in `biosample_set` that have no `part_of` field (shown below. This is allowed schema-wise, as `part_of` is not a required field. I want to verify that this is okay, or if this i…
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Note: Scope of this work is the `Napa` Database Instance. The same steps will need to be repeated in a prod-ready environment
For the "CrestedButte" Study -
id: nmdc:sty-11-dcqce727
legacy id: gold…