-
In order to hold several orthology database, it could be good to create an abstract orthology client (and InParanoidClient will extend this).
-
We need "gene" kinds of pages, filled with content. We will assume (for now) that these pages are for a species-specific gene (not any kind of "uber gene").
At minimum, I think it ought to have the …
-
I have built several views in DISCO that we can now query via services, in order to build the JSON necessary to paint our pathway diagrams.
The nif views from KEGG (in beta) are:
disease-to-pathway …
-
There are some things I need to complete pages:
1. Phenotype spotlight on Phenotype main page: This is currently "Large floppy ears." Please give me the link for a phenotype that you would like featur…
-
Fabian released his new TreeFam 9
which means:
- the TreeFam family id import script needs to pull it from TF-Compara
-
(This appears to be unique to FlyMine)
When viewing a pathway from a Reports Page, the top section contains the pathway description and then a dead link described as "More details and caveats of the …
-
First, all the HMM searches are conducted, including the reciprocal BLAST search, if appropriate. The results are stored in the database. After that, orthology is established using a special SQL query…
-
The help list needs to be updated to include describing the --no-orthology option when compiling a kam.