OpenBEL openbel-framework issues

OpenBEL / openbel-framework

An open platform for capturing, integrating, storing, and sharing biological knowledge in and across organizations.

http://openbel.org

Apache License 2.0

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issues

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Incorrect signature for activity functions

#67 abargnesi opened 8 years ago
0
WSDL functions and relationships aren't one-to-one with the framework and language

#66 nbargnesi closed 9 years ago
1
Log original exception stacktrace for SOAPFault exceptions

#65 abargnesi closed 9 years ago
0
CLOB Issues in Postgres

#64 juliakozlovsky opened 9 years ago
0
Build failure for common

#63 huangxc2013 opened 9 years ago
2
Error "null resource location" with ResolveNodes

#62 abargnesi closed 9 years ago
0
Family and Complex scaffolding documents used for Phase III do not use equivalences

#61 ncatlett opened 10 years ago
0
allow for insert / update of primary keys (derby)

#60 abargnesi closed 11 years ago
0
consolidate increases and directlyIncreases edges during KAM compilation

#59 ncatlett opened 11 years ago
2
complexes and composites with the same components in a different order should be equivalent

#58 ncatlett closed 11 years ago
2
kam node/edge resolve api cannot resolve to source kam

#57 abargnesi closed 11 years ago
1
Add initial REST API, language and data fundamentals

#56 nbargnesi opened 11 years ago
0
BEL Framework tools do not include access to KAM description

#55 ncatlett opened 11 years ago
0
Multi-values set annotation record only picks last annotation value

#54 abargnesi opened 11 years ago
0
Orthologous self-loop (aka buckle) will remove its incident node during orthology collapsing

#53 abargnesi opened 11 years ago
0
Invalid escape sequence in string causes infinite loop while parsing

#52 abargnesi opened 11 years ago
0
UNSET ALL is not implemented as documented

#51 ncatlett closed 11 years ago
1
Expand rateLimitingStepOf relationships

#50 nbargnesi opened 11 years ago
2
Compiling two documents is not a commutative operation

#49 abargnesi closed 11 years ago
0
invalid terms compile without error (and insufficient warning)

#48 ncatlett opened 11 years ago
0
KamManager --summarize does not find Citation annotations

#47 ncatlett opened 11 years ago
0
CacheManager does not resolve orthology documents

#46 abargnesi opened 11 years ago
0
Citation format should require less information

#45 ncatlett opened 11 years ago
0
Update phase3 gene scaffolding to expand network

#44 abargnesi opened 11 years ago
0
Release Notes file for OpenBEL Framework?

#43 wshayes closed 11 years ago
1
Need to remove userguide directory

#42 wshayes opened 11 years ago
1
Missing orthologous relationships

#41 ncatlett opened 11 years ago
1
Improve Java API

#40 nbargnesi opened 11 years ago
0
Addressing issue #1, duplicate JAR's in distribution

#39 jhourani closed 11 years ago
1
Refactor org.openbel.framework.internal

#38 nbargnesi closed 11 years ago
0
Maven changes to support deploying to maven central

#37 abargnesi closed 11 years ago
0
Fixes issue #34, implements --no-preserve.

#36 jhourani closed 11 years ago
0
Compiler should handle missing options more elegantly

#35 jhourani opened 11 years ago
0
Fix --no-preserve option when compiling KAMs

#34 abargnesi opened 12 years ago
1
Addresses issue #24, DocumentConverter

#33 jhourani closed 12 years ago
0
No-orthology option added in 'help'

#32 jhourani closed 12 years ago
0
No-orthology option added in 'help'

#31 jhourani closed 12 years ago
1
No usage string outputted for most tools

#30 abargnesi opened 12 years ago
1
--no-orthology help option

#29 jhourani closed 12 years ago
2
Removed un-needed conditional

#28 jhourani closed 12 years ago
1
compilation Phase III introduces multiplicate statements

#27 ncatlett opened 12 years ago
2
Performance regression in phase four

#26 abargnesi opened 12 years ago
1
Memory usage regression issues with compiler

#25 JamesMcMahon opened 12 years ago
4
Bug in DocumentConverter tool

#24 jhourani closed 11 years ago
5
Shell scripts should warn the user if they are not running Bash

#23 JamesMcMahon opened 12 years ago
0
KAMs should store more information

#22 JamesMcMahon opened 12 years ago
0
Compute classpaths relative to bel framework installation (not BELFRAMEWORK_HOME)

#21 JamesMcMahon opened 12 years ago
3
Remove support for KAM database encryption

#20 JamesMcMahon closed 11 years ago
2
Require less information for compiling KAMs

#19 JamesMcMahon opened 12 years ago
2
Failing integration test involving reflection

#18 abargnesi opened 12 years ago
1