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![image](https://github.com/sars-cov-2-variants/lineage-proposals/assets/78371872/65f738c3-7617-4d77-9309-960a456620e0)
tree: https://nextstrain.org/fetch/genome.ucsc.edu/trash/ct/subtreeAuspice1_gen…
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Defining mutations: GQ.1>T6634C, C14183T(ORF1b:T239I), C27532A (ORF7a:H47N)>G22200A (S:G213E), C28831A
GISAID query: G18025T, C24358T, C28831A
Earliest seq: 2023-04-21 (New Zealand, EPI_ISL_17739724…
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Mutations on top of EG.5.1*: G18397A first (orf1ab:V6045I = Orf1b:V1644I)-> T20631C->A22034G (S:158G)
Inquiry: Spike_Q52H,Spike_F456L,G18397A (use A22034G to search for the subbranch)
Sequences: EPI…
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There may be a EG.5.1 sublineage with ORF1b:K2557R (A21137G; NSP16:K160R), ORF3a:P240L (C26111T) first detected in Guangdong, China.
As of 2023-07-17, Cov-Spectrum reports 52 good-quality (55 total…
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Defining mutations: XBB.1.22.1>C25517T (ORF3a:P42L)>A8347G>C11674T, T22246G (S:D228E), G23868C (S:G769A), C24442T, C25066A (S:D1168E), A25974G, C27429T, C28603T
GISAID query: T28297C, A22161G, T22246…
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cc @corneliusroemer
@NkRMnZr found first and i independently rediscovered an undesignated branch of XBB.1.5 that seems beeing disproportionately sampled from MAY ahead and it is acquiring interes…
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from https://github.com/sars-cov-2-variants/lineage-proposals/issues/155
FE.1.1.1+C15180T+T9445C+C28057T(orf8:A55V)+G23426A(S:V622L)
GISAID query: G23426A,C28057T,T23018C
No of seqs: 110( Puerto…
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**Defining mutations:** _(On top of XBB.2.3.11's defining C22995G/S:T478R) >_ T16389C > C22971A(S:T470N)
**Query:** `C4234T, G6536A, C22971A, -G22113T`
**Earliest seq:** 2023-04-24 (EPI_ISL_1763…
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Defining mutations:
FY.3>C23191T>T10810C>C27884T>T3541C, C4832T, T8971C, C14931T, G22093A (S:M177I), C25521T, C26029A (ORF3a:Q213K)
Then Branch A (3 seqs) with 15 nuc mutations>5 ORF1ab aa mutatio…
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XBB.1.31 is one of the few non 486P carrying lineage still circulating.
Its tree is splitted in two bigger branches:
![Schermata 2023-06-04 alle 10 01 24](https://github.com/sars-cov-2-variants/line…