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Hi Felipe,
I think I just triggered a bug caused by no PSM case after the first pass. Following is the log
```bash
+ philosophe filter --sequential --razor --mapmods --models --tag rev_ --pepxm…
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Dear Prof Rappsilber and colleagues,
I am trying to follow the instructions you described in the manuscript you published in Nature protocols for performing quantitative crosslinking mass spectrom…
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The annotation standard for proteomics experiments are not clear enough for curators.
Problems that are causing issues:
1. Differentiating between a purification and an enrichment
2. What to …
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Hi Harald,
I did msgf search using searchCLI and when I want to open the results with peptide shaker it says import data canceled (after 2 or 3 min). I repeated with X!Tandem and It works without a…
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Many thanks to the Nesvizhskii lab for releasing these awesome tools!
I'd be very keen on running MSFragger through our PD2.2 server, and managed to get the nodes up and running. The only problem …
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A complete PRIDE submission requires `mzML`, `mgf` and `mzIdentML`. We generated `mgf` with `FileConverter` and `mzIdentML` with a standard MS-GF+ workflow. The complete PRIDE submission is not possib…
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I tried running philosopher (20181128) on a sample but it fails at the filtering step.
`
./philosopher_linux_amd64 workspace --clean
./philosopher_linux_amd64 workspace --init
./philosopher_linu…
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This thread continues the discussion in #1027. As part of the protein inference beta testing, we aim to reproduce roughly the results from a TPP protein quantification published in [1]. Even with a wo…
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kegg maps a été mis à jour pour prendre en compte les lignes contenant un '#', dans un soucis d'harmonisation, il faut que tous les outils ne considèrent plus le '#' comme le début d'un commentaire et…
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Dear developers,
i have now the first dataset analysed with MSFragger. My primary aim for using MSFragger was the open search option. There were a lot of modifcations assigned/observed. My first qu…