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Some nucleotide-protein interfaces have a very low score, like interfaces 6 and 7 of 5B1L.
I suggest to do a more thorough analysis to see if this is a common case, because here the DNA is rolled a…
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Hi qiyun:
I am running the my own genome with local blast nr database but i am getting just one hit per protein that too the same one with 100 percent identity. and i tested sample files to get the…
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`pv`'s ribbon render is too skinny, making it difficult to see the changes.
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Hi
my name is jong hui hong
while I'm trying to train 3d CNN with my data, I got problem with
grid box size because my ligand was too big.
I know that the size of grid box which encompass
pro…
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Hi, the script omega protein gain script no longer works with the addition of vitamins
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This function in SGN::View::Feature is relied upon by lots of code. It needs tests to make sure it works correctly in all edge cases (of which it has many).
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## **Objective**: To replicate the BioMuta pipeline to generate a dataset as close as possible to the current BioMuta dataset.
**Presentation Shared with meeting notes**: https://docs.google.com/pr…
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[GROMACS tutorial](http://www.mdtutorials.com/gmx/complex/01_pdb2gmx.html )
[GROMACS in the Cloud: A Global Supercomputer to Speed Up Alchemical Drug Design](https://doi.org/10.1021/acs.jcim.2c0004…
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mdvwhole -f Insulin-Dimer_3W7Y_DES-Amber_NPT_300K.part0020.only-protein.gro -x Insulin-Dimer_3W7Y_DES-Amber_NPT_300K.part0020.only-protein.xtc -o Insulin-Dimer_3W7Y_DES-Amber_NPT_300K.part0020.only-pr…
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Thanks for an excellent package.
My issue is as above. Certain amino acid sequences simply crash with an error of type
`[1] 132848 segmentation fault (core dumped) ./derna -i ~/test.fasta -o o…