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UniProtKB:Q9Y876 | psh3 | involved_in | GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport | ECO:0000318 IBA | GO_REF:0000033 | PANTHER:PTN002000498 more... | 284812 Schizos…
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I'm not sure but seems in the "codon to amino acid" table the amino acid column should have title "amino acid" instead of "Protein":
![Selection_159](https://user-images.githubusercontent.com/46182…
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I have a dataset of one hundred thousand protein pairs, which includes both real and predicted data.
I would like to score the protein pairs using L3N. How can I implement multithreading?
I have u…
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### Question
Hi, I am loading a JNLPBA dataset from the Flair library, and I would like to keep only the protein mentions, renaming them as "Gene." Additionally, I want to remove all other labels d…
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I'm running encodermap on a 500,000 frame simulation of a 394 aa protein. I'm using central_dihedrals as the CV.
When I print the shape of the highD data, I get (500000 1179), which makes sense.
W…
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Hello I recently installed genomad v1.8.0. However, when I tried to run the command, it return an error below.
(genomadv1.8.0) dostvip2@DESKTOP-L5H6T8M:/mnt/f/Klebsiella$ genomad end-to-end 09_MOB…
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We have several requests for additional ENSEMBL identifiers in Babel:
* @beasleyjonm gave me [a list of 624 ENSEMBL protein identifiers](https://github.com/TranslatorSRI/Babel/files/9789566/norm_node…
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Hi,
I use compass with mosaic from proteogenomic data. I would like to reuse the compass data (small sub-clones) with the phenotypic data to analyze the protein expression of the sub-clones. Is this …
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e.g. if you search NameRes for "fgf8", we get back several different UniProt IDs for human, zebrafish, etc. UI wants to make sure that users can clearly differentiate between the identifiers by means …
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Nice Paper，could you tell me how to add the atom and atomic coordinate of the initial ligand in the sample of protein pocket? Just like smiles seq2seq, we give the prompt of sequence like CCCC. In thi…