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Hello @xindong95 , I'm interested in using SCRIP software to identify gene targets of some transcription factors that apparently have an important activity on my samples. I processed my scATAC-seq dat…
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Thank you so much for this great package; I have been a fan of WGCNA for a long time. While running the ModulePreservation step for my cross-modality data (single-cell RNA-seq and single-cell ATAC-seq…
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When I try running CharacterizeVariants_single_input() in R, I get this error:
> library(RegVar)
> CharacterizeVariants_single_input('~/')3
Error: unexpected numeric constant in "CharacterizeVari…
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When running deepvariant on single cell Pacbio longread data, is it possible to have the output include the barcode where the SNP was found?
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https://mp.weixin.qq.com/s/ubgQu4qB4WZ7hMTN-BDq7Q
ixxmu updated
2 months ago
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https://mp.weixin.qq.com/s/x7al6cEMRMD_mHUaJDGrew
ixxmu updated
5 months ago
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https://mp.weixin.qq.com/s/jpugbjhVvOQIESTCZcbW-A
ixxmu updated
2 months ago
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https://mp.weixin.qq.com/s/nJY-cuGujP4d-4UtkHO9Xg
ixxmu updated
5 months ago
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Hi there,
Thanks for creating this wonderful package.
I've read your recent biorxiv paper on HGSOC ("Immune and malignant cell phenotypes of ovarian cancer are determined by distinct mutational proc…
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See https://docs.google.com/document/d/1HBOPe6h_RjxltfbPenKsNmoN3MVAtkhVKJ_LGG1DBkA/
7/31/19 from Jean Chang at The Broad:
Embed project visualization from SCP (manual handoff where SCP runs a pipel…