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The following Python program should work, but does not. The SED-ML seems to be created properly:
```
import tellurium as te
antimonyStr = '''
// Created by libAntimony v2.9
model *BorisEJB()
// …
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The documentation files which generate the doxygen from tellurium.py are missing in the repository. There should be a `docs` folder which contains the latest version & the scripts to generate it from …
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unzipy is used in SedmlToRr but not defined anywhere.
This worked due to the very bad practise of defining imports within functions (as long as there is no test for the function, the code can be impo…
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Add sbmlantimony interconverter method to tellurium.py
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There should be a document about coding guidelines/best practices for tellurium (can be part of the release checklist wiki document).
Some short basic things like
- if you write a function/class/modul…
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Add the method
te.getEigenvalues (m)
To the tellurium startup.
Use
> > > w, v = LA.eig(np.array([[1, -1], [1, 1]]))
to implement
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This model crashes roadruner, why?
import tellurium as te
r = te.loada ('''
J0: A -> D; A*0.05
A = 100
D = 0
''')
result = r.gillespie (0, 10)
r.plot (result)
runfile('C:/Users/hsauro/Documents/un…
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`monte.py` produces the following warning:
```
python monte.py
/usr/local/lib/python2.7/dist-packages/matplotlib/__init__.py:872: UserWarning: axes.color_cycle is deprecated and replaced with axes.…
0u812 updated
8 years ago
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Previous version supported the r.gillespie() syntax which was a convenient way to quickly do a stochastic simulation. Recent changes means that users now have to do the following to do a stochastic si…