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Hi,
Thank you for developing this tool - I think this is a very neat and useful idea, especially given how Cell Ontology seems to be gaining traction. I included it in the `Scanpy` tutorial I'm pu…
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https://mp.weixin.qq.com/s/-sdYyBG_zB6Lhi9vHkpKBw
ixxmu updated
2 years ago
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Hello, I am relatively new to R and to analyzing single-cell data. I am hoping to analyze a Seurat object in immunarch and am having a problem with the upload (primarily a parsing issue). Has anybody …
akm34 updated
2 years ago
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6.0.2: Pulling from cumulusprod/cellranger
a330b6cecb98: Pull complete
d3b7d82b7494: Pull complete
28ef07914b95: Pull complete
69c7ac712263: Pull complete
50090bb04d6b: Pull complete
95de73…
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https://mp.weixin.qq.com/s/1KtuKmXSodcnaBDCVb-5LA
ixxmu updated
2 years ago
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I run the test data without any probelm, however, the error poped when I analyzed our data at step 5. I check the result at step 4, and found that IntegratedNet_edgeCost_common.txt only contained NA, …
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Hi
I am getting an error when saving the run regression model.
This is the error I am getting
Traceback (most recent call last):
File "/home/mshruv003/.local/lib/python3.9/site-packages/annda…
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I am encountering an error at Step 13 of the inferCNV code. I am running an analysis with normal references. **The code I ran is:**
infercnv_obj = infercnv::run(infercnv_obj,
…
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Hello,
I have questions about the software outputs especially on 10x Genomics data.
- First, will there be more specific explainations about the meaning of each column names in all output files…
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Dear copyKAT developers,
I am trying to implement your package in my analysis. However, I noticed that the very first command asks to extract the raw count matrix from the Seurat object and turn it…