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My data result says that 'SMAD3' is activated in interested cluster. However, if I check the 'SMAD3' gene expression, no expression was seen.
I thought if we have activated TF, than we should have…
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Hi Capybara Development Team,
Thank you for this exciting package! I am interested in using the Capybara workflow with a human dataset and have questions regarding the development of the bulk refer…
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Hello!
I am new to Seurat, and running into some problems while working on the GSE109125 dataset, taken from GEO. Unlike most datasets, this does not contain seperate matrix, barcode, and features …
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I only have scRNA-seq and bulked RNA-seq. Could I use this tools ?
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Hello everyone,
Thank you developing Sierra. I want to use it on some scRNA-Seq data but as I guess, the alignment step is crucial in this case. I believe STAR works fine in this case. Is it okay to …
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Hi there,
I am analyzing a scATAC dataset and I have integrated this dataset with a scRNAseq data set using the FindTransferAnchors() function. With this seurat object, I am able to plot using the …
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Thanks for this great package and the accompanying package cellsnp-lite @huangyh09 .
Unfortunately, I have high amounts of unassigned cells although I tried several approaches and tried to include…
mihem updated
2 years ago
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Hi,
I think this is more of a "discussion" than an "issue," but I have a habit of posting under "issues" and I don't think "discussions" are enabled for this repository.
Essentially, in the **di…
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Hello! The following error came from running the run_CARseq function with normalized bulk RNA-seq counts, cell fractions, and group labels:
Gene 16479 of 16479 has been processed at 2022-05-27 15:…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/SydneyBioX/scFeatures
Confirm the following by ed…