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Hi Felix, I'm currently trying to calculate the proportions of CG, CHG and CHH methylation and am curious: should I factor in the C's in the Unknown context? The reason I'm asking this is because I'm …
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## Affected Puppet, Ruby, OS and module versions/distributions
- Puppet: 6.3.0
- Ruby: ruby 2.5.3p105 (2018-10-18 revision 65156)
- Distribution: debian sid
- Module version:
├─┬ puppet-co…
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Whenever I try to run multiQC rules, the rule gets stuck on `[INFO ] multiqc : Searching : /path/to/stats/`, and my job gets cancelled due to reaching the requested job time limit. I've tr…
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Welcome,
I`ve put .xpi in /usr/lib64/firefox/distribution/extensions, and now all user got menu ModernKiosk, before anabling policies.
I have one question.
Where and how to configure globall…
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Hi, thanks for a great package!
I am having some issues when trying to perform runHomer for motif discovery across my clusters.
Here is the code I ran
motifs = runHomer(
CD8.sp[,idy.ls…
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From: Maarten van Iterson mviterson@gmail.com
Add function argument na.rm=FALSE/TRUE to detectionP which should be
passed to colMedians and colMads such that detectionP can handle NAs in
the Red and…
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I used modkit to generate per-CpG methylation percentage data:
```
modkit pileup -t 20 --cpg --ref genome.fa sample_A.bam - | awk '{if (($4 == "m") {
print $0}}' > sample_A.modkit_pileup.strand_spl…
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Hi,
I just created a small fast5 file with the latest guppy 3.4.1. I shared it on google drive: https://drive.google.com/file/d/1H4xiOw9Q4bbTBbunlJX2Be1YbPoQC_qh/view?usp=sharing
I used methylatio…
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Hello, I am currently using the joern tool, I have already used Joern-parse to output cpg files, and now I want to use a python script to implement calls to joern on the command line. And get the CPG.…
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```
What steps will reproduce the problem?
1.click the "torrent" pull-down menu
2.under the "connect to daemon" submenu, select "new connection"
3.enter a known-good hostname that belongs to your runn…