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Dear @songtaogui :
I found a question in this bash file.
**${pre}.rmNPlant.ID-only** is generated in line 55(**cut -f 1 ${pre}.rmNPlant.ID > ${pre}.rmNPlant.ID-only**)
How does this assign a val…
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### Description of the bug
Trying to run scRNAseq on an HPC with --fasta and --gtf, keep getting error :
`Unknown option: -—fasta -- Check the available commands and options and syntax with 'help'…
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There is a weird behavior that I encountered when running panaroo using PRANK as the aligner. Annoyingly, it dumps a lot of tmp files in the working directory while running the `generating core genome…
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For about the millionth time I've just been writing a methods section for a manuscript, e.g. something like:
> Samples were sequenced to a depth of approximately 100 million 50-base pair, paired-e…
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When I use this **Command:**
bam_files
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Submitting Author: Simon van Heeringen (@simonvh)
Package Name: genomepy
One-Line Description of Package: simple and straightforward downloading and management of genomic data.
Repository Link (…
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Hi,
I've been trying to use strobealign from source using the current head, and have ran into a few issues. Maybe the solution is just wait for the stable release 😉
The first is trying to use the…
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I'm new to Riboseq, and, looking for helpful tools, have found this R package.
After reading the paper, I am still not sure, if it is the right one for us. We don't have RNA-Seq for our project, …
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Hi, I got the following error with my dataset when I was trying to pre-assign all 40 chromosomes to 2 subgenomes. Apparently, SubPhaser re-assigned all chromosomes to SG1. With a smaller number of ass…
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Hi! I'm a representatively ignorant software engineer, so here's what I'm left wondering after reading the Biological Foundations and skimming the rest (may revisit another day).
## Confusion Area …