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Quick question to make sure on speaking terms YODA and I are. :wink: (I am sure this kind of "joke" must SUPER old for the datalad team).
The ~~BIble~~ BIDS specification [suggests](https://bids-sp…
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I wrote a Python code that can be used to store a series of images data as one bp file. Each image is stored as a variable in the bp file. The code works fine when I used several image to test. Howeve…
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STAR is awesome RNASeq aligner.
I'm running a pipeline that runs the STAR version 2.7.9a , but when trying to mapping with the Human genome(hg38) using the bam file as input on the HPC platform wit…
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Hello,
I've recently started using this pipeline for a project I'm working on and I've run into an issue. I ran one fasta file, one bam file and its corresponding bed file, and a custom config fil…
cm760 updated
5 years ago
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I tried to install dragon following the steps on the [Getting Started](https://dragonhpc.github.io/dragon/doc/_build/html/start/start.html#install-dragon) page of the documentation but had a few issue…
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Greetings @brianjohnhaas,
I am trying to run trinity on my institute HPC using singularity. I have succeeded for many times, but recently, there is a possibility of failure. It says all commands co…
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Hi,
I would like to start the Granatum server on our cluster. However, I do not have a Virtualbox installation at hand, just R.
Is there a way How I could install Granatum?
Thanks!
Best,
Simon
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VCF to Zarr conversion is an embarrassingly parallel process that currently uses Dask Delayed to schedule tasks.
It would be fairly easy to make it possible to run on any parallel backend - example…
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The following error message is seen when I try to convert Micromanager data `/hpc/instruments/cm.dragonfly/Dashboard_aim2/2024_08_14_ZIKV_pal17_48h/2024_08_14_ZIKV_pal17_48h_1/` using iohub convert fu…
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Hello there,
Thank you for creating and maintaining this amazing tool. The latest version of deepsomatic looks awesome!
I have been testing the latest docker image of deepsomatic (docker://google/de…