-
http://software.broadinstitute.org/cancer/software/gsea/wiki/index.php/Data_formats#GMT:_Gene_Matrix_Transposed_file_format_.28.2A.gmt.29
- use jq for this
-
Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/LTLA/SingleR
Confirm the following by editing eac…
-
**Overview**: Users can obtain the analysis results of existing assays in the DCP and use the data and metadata to perform analysis outside of the DCP
**User Story**: As a researcher with a keyboar…
kozbo updated
5 years ago
-
Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/Bioconductor/HCAExplorer
Confirm the following by…
-
**Reviewer 1: HPAnalyze package by Tran et al.**
- [x] I had trouble installing using the installer script provided. By a stroke of determined try, we removed the phrase "Version 3.9" then the inst…
anhtr updated
5 years ago
-
Hi @cbravo93,
1) Not so much about the library, but about the analysis itself: to give the topics meaning, in the [tutorial](https://rawcdn.githack.com/aertslab/cisTopic/f628c6f60918511ba0fa4a8536…
-
Wranglers need to determine guidelines for choosing the organ and organ part, as assignment to a system if needed.
Currently, there are inconsistencies in ingested datasets for organ and organ fiel…
-
Hi @federicomarini,
The team at Single Cell Portal noticed your comment:
"https://portals.broadinstitute.org/single_cell/study/SCP43/atlas-of-human-blood-dendritic-cells-and-monocytes#study-visua…
-
The IDR has grown substantially since its initial release. As of this writing it has nearly 100 TB of data from over 50 studies. The IDR is heavily used, receiving more than 100,000 hits per day and s…
-
Hi! The package feature `iCell` works wonderfully for compressing the Human Cell Atlas 270k+ cord blood as well as the 250k+ bone marrow cells to 8k & 8k high quality cells.
However, when trying to…