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Project admin (Amber) from PACA-AU sent list of confirmed ICGC donors to carryover to ARGO. The project has the required ARGO core clinical fields for these ICGC donors: https://drive.google.com/file/…
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EGA has staged whole exome data for 46 donors: https://github.com/icgc-argo/ega-file-transfer/blob/master/ega_operation/20210114/PACA-AU/to_stage_analysis.tsv. Will need to generate jobs and kick off …
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409 donors were imported to intermediate-song, but 116 are missing raw reads. See https://platform-ui.qa.argo.cancercollaboratory.org/submission/program/OCCAMS-GB/dashboard Investigate why these donor…
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Update the announcement blurb on the homepage:
> **Announcements:**
>**March 01, 2021:** The 17th Scientific Workshop & 4th ARGO Virtual Meeting Plenary Session is open to public for [registration]…
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Add the Manifest download option to the Download button in the data explorer results table
The manifest file will be generated and can be downloaded by users to their machine. Using the manifest fil…
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If a clinical field in the ARGO dictionary has a reference to a common data element in the caDSR CDE Browser (https://cdebrowser.nci.nih.gov/cdebrowserClient/cdeBrowser.html#/search), it has been indi…
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This issue is related to the Extended (Optional) [Comorbidity](https://docs.google.com/spreadsheets/d/1XsftOlg-ZEDNlEiHe_IYaUykD2LQaza-WT3YARUTXD0/edit?usp=sharing) clinical table which has not yet be…
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Prepare SONG payloads for recently EGA->Collab transferred data (https://github.com/icgc-argo/ega-file-transfer/blob/master/ega_xml/v20200915/ESAD-UK/ESAD-UK_WGS_Audit_ICGC28.tsv). This dataset consis…
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Score was deployed with a bad value, resulting in errors when attempting to use both the dev and qa environments (https://github.com/overture-stack/score/issues/290). The errors were not entirely cle…
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## Background
Some OCCAMS-GB donors have a duplicate profile in ICGC 25k. This is led to data clusterfuck that we need to resolve.
1. In ICGC 25K, file data is associated to an `old` donor i…