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I would like to use my own association file, as the organism im working is not a model one.
I have got associations between my annotated genes and GO:terms by using interproscan.
I have found th…
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**Are you using the latest release?**
If you are not using the latest release of funannotate, please upgrade, if bug persists then report here.
**Describe the bug**
funannotate predict still prob…
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We are organizing regular online CoFests (Collaboration/Contribution Fests) every 3 m…
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Hello:
I'm trying to run Interproscan-5.26-65.0 using a nucleotide fasta, but it fails at mobidb-lite step even with the test file.
The command that causes this issue is: ./interproscan.sh -t n -…
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Dear Jon,
Sorry for yet another query. I am having an issue with the "annotate" finding the database files. I know issue #142 logged a similar problem, but that solution has not helped me.
**Ar…
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The current code can't be compiled, with the following output
```
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO]
[INFO] InterProSc…
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>- page 5, line 29: InterProScan 5.4 was used to produce functional annotation. It would have been better to use a recent version of this software (5.29-68.0 at the time of writing) to fit with data p…
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Hi,
would it be possible to include an example upload file and/or some basic instructions for generating the heirarchy file? I've run KEGG's blast kOALA and KAAS and i can't find a way to download s…
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I have to parse a xml from Inteproscan and couldn't find a python module for that.
Should I just deal with the XML directly or is it worth to implement a biopython module + the XML parser?
If the b…
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Will test current situation and whther upgrades are needed