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Note: all of the following is a bit speculative and an attempt to try and understand how value sets and sssom fit together.
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Many or even most clinical mapping …
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This happens regardless of what MIxS package I load. The other terms in the template seem appropriate for the selected environmental package -- but it seems to be that perhaps the allowable values her…
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For discussion in 2024-07-26 LinkML developer's meeting
No example/tests yet, but see
- https://github.com/GenomicsStandardsConsortium/mixs/pull/812
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Talking about: https://github.com/INCATools/ontology-access-kit/blob/main/src/oaklib/datamodels/similarity.yaml
This looks like for every similarity algorithm we want to implement, we will define a…
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It may be of interest to [validate data against a schema](https://linkml.io/linkml/data/validating-data.html#data-validation), as well as being able to [convert between representations](https://linkml…
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Would it make sense to define a core sample description set among the tables that is implicitly part of all of the metadata sets?
This way, changes to one of those fields in a data set would not prop…
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[SubmissionPortal_TermUpdates](https://docs.google.com/spreadsheets/d/1T31B5gbRgS6vuK_lIg0ZLpIyafByWhlvE2hfcCy-c4k/edit#gid=0) indicates display hints are required for
- Contributor Full Name
- Co…
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**Describe the bug**
Dev has less informative error than prod with an invalid changesheet, possibly related to changes made for https://github.com/microbiomedata/nmdc-runtime/issues/613
**To Repro…
aclum updated
1 month ago
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**Describe the bug**
The nullability of a field in the generated Pydantic model corresponding to a LinkML class is inconsistent with the nullability of the the corresponding slot in the class.
**T…
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One example of the broader issue #438
Here's an analysis of ["Definition", "Occurrence", "Package item", "Structured comment name", "Value syntax"] values for MIXS:0000002. If there's no entry for …