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This can be done with a Github Action to run say `nbval` to run all notebooks, alternatively, rendering the notebooks successfully and discarding the html output would also do the job.
Example work…
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In DESeq2, after applying getVarianceStabilizedData, all counts = 0 are transformed to negative values. These correspond to 2/3 of the values in the matrix. I am worried that this will interfere with …
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Hi CellChat team,
So the story is like this. I had a multi-sample analysis from elsewhere and had joint cluster labels assigned already. Then I came to CellChat, followed the tutorials to have sing…
mvfki updated
9 months ago
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## *Repository Creation Request*
Use this to get your experiment repository created or updated on GitHub under Virtual Labs organization.
1. #### Coordinating Institute: IIT Delhi
2. #### Appro…
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你好，我对文章中关于SCENIC的分析过程很感兴趣，但是根据文章的描述，不太确定我的理解是否正确。
根据文章内容，分析的第一步是单独使用正常样品的raw count进行SCENIC分析，预测了每个细胞类型特异的TFs，随后依次把每个来自疾病样本的细胞类型的raw count进行SCENI分析。不知道我的理解是否准确？希望能得到答复，非常感谢！
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i open a new thread to continue the discussion which started here:
https://github.com/RobinSchmidt/RS-MET/issues/280#issuecomment-525162273
but doesn't really belong to the main topic of this th…
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**Describe the bug**
While investigating connectivity issue to my coturn server I discovered that changes on the turn settings in my syampse-server aren't pickup by element. I could clearly see the r…
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#### Problem you'd like to fix
I deal with complex matrices a lot. I normally need my result in phasor form, so r/_(theta). The way I am converting from rectangular to polar is using the additional r…
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Suggestion from Tim Blakely (Google):
"Depending on the use case, calculating the channels on the fly may be practical (and likely much cheaper). Along those lines, if most/all of the calculations …
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Hi all,
I am mutating a residue of a protein using TI in AMBER, and outputting at the same time the MBAR data. In the end, I am using alchemical_analysis, but I have a problem. I know that usually fo…