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Good morning,
Thank you for the development of DIANN, which we've been using in the lab for a few months.
I understood correctly how we went from the intensity of the precursors to the intensity …
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For input protein sequence, upload box is not appearing after selecting "custom template mode," therefore unable to upload PDB or mmCIF files.
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## Description
Currently, adding concept sets is quite hacky:
```python
from eds_scikit.biology import ConceptsSet
protein_blood = ConceptsSet("Protein_Blood_Quantitative")
protein_urine = Co…
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After manipulations of the mesh, including triangulations and mesh refinements etc. the cursor position and the highlighted/selected position on the protein do no longer overlap
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The bovine data has protein sequences but DREAM-Yara only maps DNA.
The bovine data set is unique and useful because the reference set is very small (200MB) compared to other real datasets.
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Hello,
I'm doing some work that requires me to find up and down-regulated proteins. Is there a way to extract the proteins selected from either of the volcano plots and export them into a text file …
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Hi everyone,
I used EVM to annote my genome data using ab initio and homology protein alignment. Glancing through the results, I found the gene models that only supported by proteins were discarded…
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Here is a zoomed-in view of a region (snapshot of a web browser view). At the bottom, there is a `horizontal-transcripts` track showing Gencode v28 annotations, and we are at a scale where the protein…
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I hope I'm not missing something silly here. I'm seeing these two results for the same peptide for two different scans:
```
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Hi, I have a query protein sequence and I want to find orthogroup for that sequence. I don't know in howmay species its orthologues are present. How can I run orthogroup for it. What I understood from…