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The NER assigns labels based on an ordered set of categories. If the same text string occurs in two (or more) input files of different categories, there is apparently no way to specify the desired ord…
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Have the following distinct topics:
"Protein folds" (from "Protein domains and folds")
"Protein families and domains" (from "Protein families")
this is a better distinction (although it's still cont…
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Hi,
I've been reading about the BBSome to do some PAINT families and I think we need some new terms. According to a couple great reviews (PMID:19575670 and PMID:20697559), the BBSome complex is a mem…
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When processing PMC4099524, a paper on Ras/Raf signaling in human cancer, Ras is grounded as Uniprot:A0PDV5, or Rosmarinate synthase, Plectranthus scutellarioides (Coleus). The confusion might come fr…
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From an editors' call discussion:
"Merge 'cilium morphogenesis' and 'cilium assembly'? check usage first. Currently 'cilium assembly' is part_of 'cilium morphogenesis'. Lots of IMP annotations to CM…
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Hi,
I kee receivein this error message:
@> Retrieving Pfam search results: http://pfam.xfam.org/protein/PIWI_ARCFU?output=xml
@> Pfam search completed in 0.86s.
@> Query 'PIWI_ARCFU' matched 1 Pfam …
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Please note that this issue is mirrored on the GO-annotation repo at https://github.com/geneontology/go-annotation/issues/1424
@pgaudet, @selewis I'm adding it here as well to bring to your attention…
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Apologies, I fear this might make me unpopular:
I have started curating interleukins (ILs) and their receptors (ILRs). Started with IL12 and IL23 (they are related, sharing one ligand and one recepto…
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Hi,
I've installed Interpro on my Mac OS X and have attempted to execute a test run from my terminal as follows:
$ ./interproscan.sh -f TSV -i ~/Documents/interproscan-5.18-57.0/test_proteins_new.fa…
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Addition of table to illustrate and compile target components of protein families and complexes.
Target:
- Name of the protein complex/family manually added (changed) into the target dictionary
- W…