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IS there a reason you choose 30x30x30 for the limitation of the grid box? I have some protein that require 126x126x126. What happen to the docking results if I change the xyz for these proteins to 30…
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作者您好,我在复现R代码的过程中遇到了和讨论区类似的问题,请问可以麻烦您告知network.R中的proximity-class.a.csv,Rcode.class.factor.selection.R中的exp.class.csv和predict.data.csv分别对应了您的researchgate中SI. Experimental proteins identification.xlsx、S…
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Hello! I am currently conducting research on single-cell multimodal data. I accessed the code for the paper "MultiVI: deep generative model for the integration of multimodal data" published on [Ze…
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- [ ] nodeproppred
- [x] ogbn-proteins
- [x] ogbn-products
- [x] ogbn-arxiv
- [ ] ogbn-mag
- [ ] ogbn-papers100M
- [ ] linkproppred
- [x] ogbl-ppa
- [x] ogbl-collab
- [x] ogbl…
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I am wondering on how to analyze the mzid output from the MS-GF+ for protein quantifications. Which software of tools can be used to quantify proteins identified by this pipeline? I am stuck and I am …
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Sometimes, an empty functional annotation (in the format `EC:` or `IPR:`) is reported by the Unipept API. This causes downstream analysis of these samples to come up with weird or incomplete visualiza…
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Can you provide more details about your training, such as the source of the training data? Is it necessary for the crosslink data to represent a 25A distance between two proteins in a complex? Also, c…
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It's OBO policy to never delete an ID - they are always obsoleted or merged.
Can you add an obsoletion record for this? Ideally this would indicate a possible replacement term, and ideally obsoletion…
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Is it possible for https://foldcomp.steineggerlab.workers.dev/ to distribute the subset of AlphaFold database corresponding to the "Model organism proteomes" and "Global health proteomes" listed by ht…
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Hello dear developers,
I am using clusterProfiler to perform a GO analysis for an organism where I am providing my own table of GO terms and my list of genes, however, I am wondering if it is pos…