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steineggerlab
/
foldcomp
Compressing protein structures effectively with torsion angles
GNU General Public License v3.0
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extracting PDBs
#55
Yogesh1-11
opened
1 month ago
0
`foldcomp.open` - return empty structure string if structure is not found in database
#54
valentynbez
opened
3 months ago
0
`highquality_cluster30` - fragmented sequences split on undetermined aminoacid
#53
valentynbez
opened
3 months ago
0
Heads up that pip install from pypi doesn't work with python 3.12
#52
chasemc
opened
3 months ago
0
ESMFold database header issues
#51
valentynbez
opened
3 months ago
0
Multi-chain pdb
#50
Marc-commits
opened
3 months ago
1
Advice for installation with pip
#49
miangoar
opened
3 months ago
3
Python API order of torsion angle output
#48
mheinzinger
closed
3 months ago
4
foldcomp compress breaks input pdb file into multiple output files
#47
vagkaratzas
opened
5 months ago
2
version bump
#46
vagkaratzas
closed
5 months ago
0
Extraction of `FASTA` adds unnecessary `.pdb` extension if absent, which leads to inconsistensies
#45
valentynbez
opened
6 months ago
2
Errors with compressing PDB/CIF
#44
yunwilliamyu
closed
7 months ago
2
--version
#43
vagkaratzas
closed
7 months ago
2
Database extraction failed
#42
valentynbez
opened
7 months ago
2
Merging databases
#41
andymlau
closed
8 months ago
2
Dealing with nested subdirectories
#40
jomimc
opened
8 months ago
2
Subsetting databases
#39
patrickbryant1
opened
10 months ago
7
using foldcomp database with a foldseek search
#38
emzodls
opened
11 months ago
1
Retrieving structures from `highquality_clust30`
#37
PawelSzczerbiak
closed
1 year ago
6
Multithreaded database query
#36
valentynbez
opened
1 year ago
0
Error compresing `PDB`
#35
valentynbez
opened
1 year ago
2
Extracting sequences from Foldcomp database
#34
valentynbez
closed
1 year ago
7
Segfault compressing PDB structures
#33
zdk123
closed
1 year ago
3
Alignment scores
#32
HrishiDhondge
opened
1 year ago
1
[Feature Request]: JS Decompression
#31
a-r-j
opened
1 year ago
1
bug in bfactor field of OXT atom
#30
kad-ecoli
closed
1 year ago
1
[Bug] Memory leakage issue in foldcomp.get_data
#29
Oxer11
closed
1 year ago
2
subset does not work
#28
kad-ecoli
closed
1 year ago
1
decompress a subset of entries
#27
kad-ecoli
closed
1 year ago
4
[Question] Why use NeRF over faster alternatives
#26
a-r-j
opened
1 year ago
1
[Bug] Garbage collection when opening a database multiple times
#25
Oxer11
closed
1 year ago
2
AlphaFold DB proteome subset
#24
kad-ecoli
opened
1 year ago
3
Foldcomp database for AF2 representative structures
#23
a-r-j
closed
1 year ago
2
Updated to handle database input
#22
khb7840
closed
1 year ago
0
Input processor wip
#21
khb7840
closed
1 year ago
0
Input processor wip
#20
khb7840
closed
1 year ago
0
Input processor wip
#19
khb7840
closed
1 year ago
0
compression accuracy
#18
YoelShoshan
closed
1 year ago
1
Will Foldcomp database for ESM atlas be released?
#17
yakomaxa
closed
1 year ago
8
Sync master with dev
#16
khb7840
closed
1 year ago
0
Can foldseek database be built from fcz files?
#15
yakomaxa
closed
1 year ago
4
How to build custom database?
#14
yakomaxa
closed
1 year ago
11
Add recursive directory read-in mode
#13
milot-mirdita
closed
1 year ago
0
Sync with master
#12
khb7840
closed
1 year ago
0
Get not compressed data and reconstruction
#11
hhaootian
closed
1 year ago
4
Sync dev with master
#10
khb7840
closed
1 year ago
0
Many additional changes to get the python api to run
#9
milot-mirdita
closed
1 year ago
0
Initial python interface to foldcomp
#8
milot-mirdita
closed
1 year ago
0
Added merged output
#7
khb7840
closed
1 year ago
0
GCS / TAR support / Extract mode
#6
khb7840
closed
1 year ago
0
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