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Thanks for the great tool and implementation of the streamlined integration methods in Seurat 5 beta. In the current Seurat 5 integration vignettes, in memory matrix assay are used for integration.
1…
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**Describe the Error**
When I run the createGiottoVisiumObject an error message pops up and an object is never created
**Error Message**
```r
# Error in validObject(.Object) :
in…
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I'm having a few files which are giving me issues. However, the error description is relatively general (I think) and I would love to get some more information from vol2bird on which step it actually …
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When I tried to run AddGeneintegrationMatrix
> table(colData(seRNA)$Clusters)
C0 C1 C10 C11 C12 C13 C2 C3 C4 C5 C6 C7 C8 C9
6467 4923 545 152 145 97 4072 3526…
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I have just tried the new authentication system. Looks cool. However, I noticed that a bug comes when logging out. I did the following:
1. Log in with the tarzan account
2.…
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**Describe the issue**
I get an error when running preprocessIntervals.
The input files are a reference genome (hg19.fa, an index file, .fai, are in the same folder), a baits file in .bed.gz format …
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If I make a project and run `saveArchRProject` on it with a new directory, the GroupCoverage metadata still points to absolute file paths in the old project directory. Although the GroupCoverage files…
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```r
library(Seurat)
library(dplyr)
library(presto)
tmpdir
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Hi,
first of all thanks for this nice tool and especially the clear parameters and explanations.
I am trying to call small substructures in my data and therefor played around with min_size and w…
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Hi,
I am using the code below to create the WORCS setup on an existing repository.
```
worcs::worcs_project(
path = ".", # the current folder
manuscript = "none", # edit this if you want…