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### Please describe your wishes and possible alternatives to achieve the desired result.
I would like to read anndata files directly from S3 without need to download them. Some existing anndata file…
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Hello,
I'm trying to rename the coordinate names of my channels (`"c"`).
With a `MultiscaleSpatialImage`, this would be simply `new_image = image.assign_coords(c=[...])`, which works fine but is…
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### Please make sure these conditions are met
- [X] I have checked that this issue has not already been reported.
- [X] I have confirmed this bug exists on the latest version of scanpy.
- [X] (option…
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Dear developers,
I'm trying to follow your tutorial in combining for CITE-seq but fail to recombine both datasets, protein & RNA back into one object.
This might have to do with processing each s…
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Per comment from @flying-sheep in another thread (chanzuckerberg/cellxgene#1132), we should be slicing the `adata` object, not directly slicing `adata.X`.
In 0.7.1, slicing adata is significantly …
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### Please make sure these conditions are met
- [X] I have checked that this issue has not already been reported.
- [X] I have confirmed this bug exists on the latest version of scanpy.
- [ ] (option…
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This code tries to plots the `var` present in the table in the `blobs` dataset, which is mapped to the `labels`.
```python
import spatialdata as sd
from spatialdata.datasets import blobs
import sp…
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``` (base) 11:30:02
⋊> ~/PycharmProjects cruft create https://github.com/scverse/cookiecutter-scverse…
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Just wanted to flag this. I can't recall the reason at the moment (could be namespace collision), but it was advised to us from the Pyro team to use a torch `nn.Module` to wrap a pyro model and pyro g…
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Hi, I tried to run the [densenet.ipynb notebook](https://spatialdata.scverse.org/en/latest/tutorials/notebooks/notebooks/examples/densenet.html), but faced an error when creating `ImageTilesDataset`: …