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Dear Snakemake team,
It seems impossible to set `qsub` options in the default job script (below) or select a customized script. If that's correct, would you consider adding the option? That will he…
thkuo updated
2 years ago
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Hello, I read through https://github.com/BIMSBbioinfo/pigx_rnaseq/issues/35 but somehow, even though I am using your latest GUIX-version, the missing gene names affect me:
```
$ which pigx-rnaseq
…
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**Snakemake version** 6.1.1 and git version 6.1.1+7.g5349f2a4
**Describe the bug**
Errors are thrown if we have modified rules made using the `use rule ... as ... with:` syntax in a Snakemake mo…
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**Snakemake version**
`5.13.0+14.g1804ad75`
**Describe the bug**
Placeholders separated by double underscores (e.g., `data.{sample}__{id}.csv`) are not parsed correctly in case of dynamic workflo…
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Hi,
I'm using drop 1.3.3 in order to do aberrant expression analysis. However during outrider execution with 2 bam data and 9 external counts, I'm getting the following error:
```
[Tue May 30 16:…
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Dear author, I encountered UnicodeDecodeError while runnning mutpred_merge.py. I tried to correct writting as
data = pd.read_csv("intermediates/scores/" + filename, names=cols, header=None, sep="|",…
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Over yonder at https://github.com/dib-lab/portable-snakemake-workflows/, I am working on a snakemake workflow that runs sgc to build a catlas. I am receiving the following error. I have looked through…
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Dependency for package `abcdcs` and for snakemake workflow should be specified separately?
---
### Some more considerations
- some snakemake rules also use `abcdcs`. For these to work properly,…
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**Snakemake version**
5.10.0
**Describe the bug**
Calling a subworkflow `sub` with a target that is not a file, but rather a pseudo-target, the target rule first runs successfully, but then S…
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*Describe the bug*
A clear and concise description of what the bug is.
when running:
```
singularity shell fcs-adaptor.sif
```
gives the error:
```
ERROR: /bin/sh does not exist in conta…