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For example, we could look for associations between the geographic distribution of viruses and phylogeny. This could be done by computing euclidean distances between where (geographically) a particula…
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# Genestorian: An Open Source web application for model organism collections
## Participants:
Project Lead: Manuel Lera Ramirez @manulera
Mentor: Sam Haynes @DimmestP
## Vision
### The…
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Description
As a user who frequently uses the website, I would like to request the addition of a dark mode feature. Dark mode is becoming increasingly popular due to its benefits in reducing eye stra…
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Now that the [minimum metagenome covers](https://dib-lab.github.io/2020-paper-sourmash-gather/) paper is reasonably baked, I've been thinking about next steps towards strain-resolved metagenome decomp…
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If a query strain has all 8 genes assigned to clade, generate: HA/NA-PB2-PB1-PA-NP-M-NS designation.
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* RNA-level predictions: free energy changes associated with nucleotide changes within a window (X bp before, X bp after) a nucleotide change; screen for RNAse targets within sequences (not sure if th…
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As a support person I would like the INSTRON to stop logging so much. Currently it is logging ~500MB a day when disconnected of the form:
```
2021/07/01 10:15:47.360761 L0 IN:ENGINX:INSTRON_01:STR…
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The gene linkouts include Funnotate on this record, but there is no gene family assignment. One gets an uninteresting page from Funnotate.
[aesev.CIAT22838.gnm1.ann1.Ae0000010](https://jekyll-dev.l…
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add a command to display strains in 2D and 3D shell, Tri , and brick elements.
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I'm testing the `asciidoctor-multipage` extension and want to generate **asciidoctor HTML multipages**. I'm also interested in **PDF** and **one-page HTML**.
I made the following test documents atta…