-
_Edit: DOI link https://doi.org/10.1007/978-3-319-21233-3_6_
Hi Dr. Greene et al.,
Here is another paper that I found to have a quite interesting premise: https://arxiv.org/pdf/1503.01919.pdf (apolo…
-
- [x] Explore cBioPortal
- [x] See what data is available
- [x] What is their license
- [x] How can we download the data
- [x] etc
-
Is the NSP library still downloadable? I have an old copy of the library, but there is no
"/RNA/pars/cg/CG2AA/templates2.pdb"
within the library, causing ``nsp optimize`` to fail.
-
Hello. I have followed all the required installation instructions and I'm testing it out. I have a pdb file and dcd trajectory inputted. It runs through the allotted time I give it on the cluster. How…
-
Bright DNA signals in close proximity to metaphase plate are often included into DNA mask, leading to wrong downstream measurements.
-
Hi,
I used this tutorial (https://github.com/Yujiaxin419/ALLHiC/wiki/Manually-refine-ALLHiC-scaffold-assembly-through-juicebox) to get a .hic file. My commond is:
nohup bash ~/3d-dna-201008/visualiz…
-
## Description
Here I am trying to brainstorm the positional bias term, which I think could be necessary to incorporate/test at this stage.
The positional bias term could be a filter p = Conv2D of (…
-
Hi There,
I used the HiFi reads (~20x) to assemble a genome of an animal species. The output assembly is of high quality with N50 of 30 Mb. However, the genome size (2.6 G) is a bit larger than what …
-
Hello again,
Same genome as last time (diploid algae, 2% heterozygosity.) I've been playing around with both purging and not purging. Given the haplotypes are highly divergent, we get clear separat…
tcb72 updated
3 years ago
-
![quast_result](https://user-images.githubusercontent.com/96107726/224025624-e0eaf4ef-…