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Hi
I've been running Cactus on 3 different Barley genomes (planning to scale up to more genomes later). I've been running each job to create alignments of each chromosome from 1 to 7. I'm breaking …
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Hi,
I would like to try aligning some _de novo_ assembled genomes with GraphAligner because `vg mgsa` is very slow. I have 20 variants of a 1Mb chromosomes that I am trying to align to each other.…
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The paper indicates that the authors do not know of other published graph based aligners. I'm only familiar with two--- GCSA and BWBBLE. Recently another came to my attention, but I've lost the refere…
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Can you add alignment of the graphs in the middle?
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Hi
I create this chart in kibana its looks good, but when auto-refresh is turned on or by manual refresh network graph node alignment is changed. Is there any way to have fixed alignment
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The graphs are from two different systems. This is to show off the different alignment/ordering of legend text in 2.999 and 2.0. Note the alignment/spacing of the "collisions" line.
2.999+yunal:
!…
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Hello,
I have succeeded building algoHex and I have the following output/elapsed time for the proposed example in the build instructions (./Build/bin/HexMeshing -i ../demo/HexMeshing/cylinder.ovm -…
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Hi David,
I'm using Orthofinder to analyze 19 species, and the mission is stuck. The supercomputer I rented has been running for a dozen days and still hasn't run 19 species. The commands I use are a…
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Problem described in [alignment-models/issues/7](https://github.com/interactive-cookbook/alignment-models/issues/7): When converting recipe graphs, into action graphs, nodes or sub-graphs can get cut …
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If we try to make a coverage map with pack and alignments that include splits (implying non-graph edges), it fails. Is the only solution to augment first? Would it ever make sense to allow these kinds…