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Create CLI with the following commands:
input: IIIF data or multiple
output: parsed IIIF data
`allmaps iiif parse`
input: IIIF data or multiple
output: manifest that contains these images
`a…
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Hello!
I am trying to install, on my local machine, allmaps. In particular, I am interested in self-hosting an instance of the tile server.
During the installation, I am getting stuck at this poi…
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Hi, i am running allmaps. i am trying to align one linkage map and genetic map. It is giving this error,
File "/home/safflower2/anaconda3/lib/python3.10/site-packages/jcvi/formats/agp.py", line …
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Hello, I have completed the plugin configuration files. I can clearly see the map in the menu when I type the !maps command but when I validate the map which comes from the Workshop, it does not launc…
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Hello,
When I run the command:
python -m jcvi.assembly.allmaps path JM-15.bed cgi/Crassostrea_gigas.oyster_v9.dna.toplevel.fa
I got error messages as below (full log file attached):
Traceb…
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Just trying to be better about managing our to-do list with gh issues! @bertspaan
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I have the same issue on the main and develop branches.
![image](https://user-images.githubusercontent.com/6437740/218778175-435808c2-6825-4036-8409-4dfde49a5992.png)
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Hello @tanghaibao, I am getting the following error when trying to run `jcvi.assembly.allmaps path`:
```
#Command: python3 -m jcvi.assembly.allmaps path mybedfile.bed mygenome.fasta -w weights.txt…
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Currently, users can see the masked areas in the Allmaps editor. Is there any way to see the masked areas in the Appmaps viewer? Enabling the visibility of masked areas could be beneficial as it would…
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Hello @tanghaibao ,
I am struggling to interpret this output of ALLMAPS:
![Screen Shot 2023-04-28 at 2 29 12 PM](https://user-images.githubusercontent.com/101723465/235225615-cd93844a-d7db-4d44-89…