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I encountered this error during call peaking, while the call peaking process has been completed.
However, I got an error message that says "Error in g$grobs[[legend]]: no such index at level 2".
…
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Hi ,
I stumbled upon your package and it seems quite useful. I have quite a few files containing chromosomal coordinates and would like to check the regulatory elements within those chromosomal co…
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Hi! I have been using ArchR for awhile now but recently ran into issue with using getMarkerFeatures function:
Error in .logThis(cellNames, "cellNames supplied", logFile = logFile) :
object 'logFi…
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[ArchR-addGeneIntegrationMatrix-171f8742a45cc6-Date-2023-12-01_Time-16-51-22.log](https://github.com/GreenleafLab/ArchR/files/13523077/ArchR-addGeneIntegrationMatrix-171f8742a45cc6-Date-2023-12-01_T…
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### Description
Somehow test_cat_stderr (test_dockertarget_simple.TestDockerTargetSimple) is flaky and it can block archr CI sometimes.
It might be an issue in the test itself or something wrong wit…
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[ArchR-addReproduciblePeakSet-47655b744492-Date-2024-06-11_Time-11-14-47.log](https://github.com/user-attachments/files/15785993/ArchR-addReproduciblePeakSet-47655b744492-Date-2024-06-11_Time-11-14-47…
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Hi,
I would like to get the peak x cell matrix using `getMatrixFromProject`. There are over 200k cells here. I tried to google this and learned that it's related to the memory limit of R. But I won…
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I got an error while running `addDoubletScores`: ``
It seems that changes in [Matrix 1.6-2.](https://github.com/bwlewis/irlba/issues/70) are breaking `irlba`, and `ArchR` as a consequence.
Not a…
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**Describe the bug**
Here's a bug I encountered creating ArrowFiles, the following is my code :
```
library(ArchR)
addArchRGenome("hg38")
if (!requireNamespace("BiocManager", quietly = TRUE…
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I already installed dev version of ArchR (1.0.3), downgraded to R 4.1, and switched off sub-threading. For tutorial files with hg19 genome the workflow works correctly. However, for my data and genome…