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There are some Cyanobacteria identified in our nasopharyngeal data (about 3% reads, 2% ASVs; Silva v138). What do you recommend to do with such ASVs? Should I filter them out? Our project is not cyano…
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If this is an OWASP project, the adoption of it would likely benefit tremendously if it were rebranded with OWASP logo, etc. Similar to ASVS, M-ASVS, and SCVS.
I am formally recommending commercia…
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Hi all,
I had more than65k ASV sequences in my dataset and cut them down to the first 10k in the dada2 pipeline before creating the tree
`alignment = AlignSeqs(ASVs.nochim[1:1000], anchor=NA, proc…
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Need to agree on a consistent message that gets shown when the rule is triggered.
I started with something like:
```
message: |
V6 Stored Cryptography Verification Requirements
6.2.5 In…
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Just adding in case someone else runs into the same issue, feel free to remove if not helpful.
**TLDR: Be mindful of "E-" or similar strings with "-" appended to beginnings of raw sequence file nam…
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**Improvement Description**
`qiime fragment-insertion sepp` is applied in the Parkinson's mouse tutorial, but isn't followed with a `qiime fragment-insertion filter-features` step to remove ASVs that…
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**What would you like added?**
We sometimes see that developers might just serialize an entire object into JSON and returns it in a API response. Sometimes this object contains sensitive information.…
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Hi,
I am trying to compare wgs and 16s from the same samples. I use qiime2 with silva to process 16S data and I use Woltka with WoL to process WGS data, but when I generate trees, the labels are not …
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Dear Chi,
I have some doubts about applying the merge function of microeco. If it collapses or combines all ASVs/OTUs into genera (for example), I would expect the row.names of the "OTU table" to be …
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**What would you like added?**
OWASP SKF has a lot of different labs with write ups on "how to test".
We can reference these labs in parts of the testing guide
The Lab write up can be found here:…