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Hi:)
Hello, I am very interested in the tool SHOGUN and want to use SHOGUN for functional annotation.
However, I met some problems because my taxonomy is made with Kraken2 and bracken2.
1). I …
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First, all reads are merged.
We skip the CO_ and CH_ as they contain all reads for hostplant respectively.
```
ls -1 05-CLEAN-MERGED/* | paste - - | grep -v "CO_" | grep -v "CH_" > doc/all-clean-re…
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Found on qa site today.
logs:
```
2024-05-07 11:19:03.310991 Base plot.data object created.
Error in validObject(.Object) :
invalid class “TwoByTwoTable” object: 1: Specified column r…
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The output from dada2 leaves me with an OTU, taxonomy and sample information file. I'm trying to create a phyloseq object from these 3 files using:
OTU = otu_table(spc, taxa_are_rows = TRUE)
TAX…
hkr01 updated
7 months ago
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Hello,
I am having issues in creating a custom database and need some help in resolving the issue.
I found ``` https://github.com/DiltheyLab/MetaMaps/issues/5``` to be helpful and following that …
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It would be great being able to simulate rod-shaped bacteria (or rods made of connected spheres).
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## Expected Behavior
I ran this script with mmseqs2 part shown below and had a prefilter died error. What should I do?
#!/bin/bash
\## specify allocation - we want normal since we don't want to use…
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There are some missing functions for the Breezeless E Air conditioner.
- Breezeless and Breeze Mild modes
- Custom Dry - Runs a dry mode based on a target Temperature (can be set between 35 and 85%)
…
e1ace updated
5 hours ago
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**V doctor:**
```
OS: macos, macOS, 11.6, 20G165
Processor: 4 cpus, 64bit, little endian, Intel(R) Core(TM) i5-6267U CPU @ 2.90GHz
CC version: Apple clang version 13.0.0 (clang-1300.0.29.3)
g…
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Dear dev team,
it's possible, that the viral file changed again? Centrifuge is not downloading anything for viral.
Here the files:
[assembly_summary.txt](https://github.com/user-attachments/files/1…