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We would use this to add a link out from every signature in bugsigdb.org. For example, see the two signatures at https://bugsigdb.org/Study_952. This action should perform an enrichment analysis and s…
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Draw a violin plots with each bacterium count, instead of alpha-diversity plots
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#This is the collection of all microbial methylome analysis sources codes.
#(Saved for linking to future publications)
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Hi, developer,
Thanks for creating such efficient software. I have used it to find the 16S rRNA hits in my de-novo assembled genome bins. My purpose is to search for archaea and bacteria, so I run th…
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Thanks for preparing these files -- very helpful.
Now, I was working with the "sbdi-gtdb-sativa.r09rs220.1genome.assigntaxonomy.fna" file and noticed the some species contain more than a single ent…
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UD download:
https://microbiomedb.org/mbio/app/workspace/analyses/EDAUD_4104431/LGyynNS/download
500 in microbiome, Unable to run SQL
ORA-00904: "EUPATH_0009353_BACTERIA_BACTERIA_UNCLASSIFIED_ACT…
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I have created .bam files from nanopore data using Dorado.
What script/command of Methylartist I shall use to complete visualization analysis?
db-guppy or ????
what is next step?
where should I us…
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@JuulDeWitte In de nieuwe publicatie ontbreken:
```
Bacteria Nostoc commune
Bacteria Nostoc pruniforme
Chromista Ascophyllum nodosum
Chromista Attheya armata
Chromista Bacillaria paxillifer
C…
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I notice that the top-ranked bacteria are sometimes caused by outliers of `linda` analysis. This happens when some samples have five species and other species have fifty species detected, for instance…
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Hi,
I have run the Classify_bins module on over 100 bins. The output in some of them are correct (as I already double checked with another tool) but at least in one bin that I was expecting a speci…