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### Description of bug
I tried to use MultiQC with singularity. But it failled to add VEP stats. I also tried with the conda version of multiqc but it failled too.
### File that triggers the error
…
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## Check Documentation
I have checked the following places for your error:
- [ ] [nf-core website: troubleshooting](https://nf-co.re/usage/troubleshooting)
- [ ] [nf-core/sarek pipeline doc…
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Hi there!
I have a problem running the sarek pipeline, the bamQC jobs get canceled after a day and I'm failing to increase the runtime either via command line or config file.
## Check Documentat…
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I am getting this error:
Cannot invoke method toInteger() on null object
-- Check script '/home/ubuntu/.nextflow/assets/nf-core/sarek/main.nf' at line: 4183 or see '.nextflow.log' file for more…
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**Describe the bug**
Seems that collection input with `multiple="true"` (ie ``) is possible but has some rough edges.
Problems:
- its used in Galaxy tests: https://github.com/galaxyproject/ga…
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## Check Documentation
I have checked the following places for your error:
- [x] [nf-core website: troubleshooting](https://nf-co.re/usage/troubleshooting)
- [x] [nf-core/raredisease pipeline d…
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Hello,
Thank you very much for creating ATACseqQC!
It is a great tool!
I may have missed it but is there a way to process multiple bam files at once?
Thank you very much in advance for letting me …
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## Is your feature request related to a problem? Please describe
several modules are missing software licenses in `meta.yml`
## Describe the solution you'd like
modules should have a `license…
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Previously, we had not been using the TSS enrichment process while processing our samples, but after introducing this aspect into the processing, it appears as though whenever we run a sample it stops…
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This is a list of all module tests that we need to get the tests passing for again: Please assign yourself by editing this issue:
- [x] bowtie2/align (assigned @JoseEspinosa )
- [x] bowtie2/build_…