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nf-core
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raredisease
Call and score variants from WGS/WES of rare disease patients.
https://nf-co.re/raredisease
MIT License
75
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35
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Refactor citations
#577
ramprasadn
closed
2 days ago
1
update peddy module
#576
ramprasadn
closed
2 days ago
2
bash: singularity: command not found
#575
hrydbeck
opened
4 days ago
4
Refactor
#574
ramprasadn
closed
2 days ago
1
Turn off workflows irrelevant for WES analysis
#573
ramprasadn
closed
4 days ago
1
Add a new paramter to skip sv calling
#572
ramprasadn
closed
4 days ago
1
Add parameters to skip snv calling and repeat analysis
#571
ramprasadn
closed
4 days ago
1
Few fixes
#570
ramprasadn
closed
5 days ago
1
Few fixes
#569
ramprasadn
closed
1 week ago
1
Mismatch with new DNAScope ML model format
#568
Jakob37
opened
2 weeks ago
2
Container for get_chrom_sizes doesn't work
#567
Lucpen
closed
4 days ago
1
Stub run (and regular run) crashes on PEDDY
#566
Jakob37
opened
2 weeks ago
2
destination filesystem does not support xattrs
#565
hrydbeck
opened
2 weeks ago
2
Bigtools
#564
ramprasadn
opened
2 weeks ago
0
adds missinf citations for bwameme
#563
jemten
closed
2 weeks ago
1
typo
#562
EmelineFavreau
closed
3 weeks ago
2
refactor
#561
ramprasadn
closed
1 month ago
1
https://ai.marrvel.org / how to integrate to Scout and our analysis?
#560
fulyataylan
opened
1 month ago
5
updating meta.sex type check
#559
jemten
closed
1 month ago
1
update modules
#558
ramprasadn
closed
1 month ago
1
Resolve warnings
#557
ramprasadn
closed
1 month ago
2
Fix join issues in ME calling subworkflow
#556
ramprasadn
closed
1 month ago
4
Release 2.1.0
#555
ramprasadn
closed
1 month ago
1
ped file cannot be created when outdir is an s3 path
#554
evanfloden
opened
1 month ago
1
Add bwameme
#553
ramprasadn
closed
1 month ago
1
Skip mitochondrial analysis for WES
#552
ramprasadn
closed
1 month ago
1
Bwafallback
#551
ramprasadn
closed
1 month ago
1
changed valid values for the sex variable
#550
sima-r
closed
1 month ago
4
Error when 'other' is given as gender
#549
sima-r
closed
1 month ago
2
Template update v2.14.1
#548
ramprasadn
closed
1 month ago
1
Important! Template update for nf-core/tools v2.14.1
#547
nf-core-bot
closed
1 month ago
0
Important! Template update for nf-core/tools v2.14.0
#546
nf-core-bot
closed
1 month ago
1
Include "other" variants for CADD to analyse multallelic indels
#545
fa2k
closed
1 month ago
3
Multi-allelic indel sites don't get CADD scores for all alleles
#544
fa2k
closed
1 month ago
0
Bwa mem error
#543
rannick
closed
1 month ago
1
Join error ME_INDEX_SPLIT_ALIGNMENT
#542
fa2k
closed
1 month ago
10
adding explicit temps
#541
jemten
closed
2 months ago
1
could not open image Script8C84027CBF0BFB90846176A9D9C58EDE@30624c7
#540
hrydbeck
closed
1 month ago
1
Nextflow version requirement (documentation)
#539
fa2k
closed
2 months ago
1
Refactoring + other issues with cadd and samtools merge
#538
ramprasadn
closed
1 month ago
6
Error_during_installation
#537
vishramt7
opened
2 months ago
10
Patch release 2.0.1
#536
ramprasadn
closed
3 months ago
1
GATK4_GERMLINECNVCALLER modules don't emit .calls. Should be .cohortcalls or .casecalls?
#535
bnjvrjnke
closed
2 months ago
2
Update changelog
#534
ramprasadn
closed
3 months ago
1
Bumpversion 2.1.0dev
#533
ramprasadn
closed
3 months ago
1
update citations and bibliography
#532
ramprasadn
closed
3 months ago
1
Fix parameter's not resolving properly (Maxime)
#531
ramprasadn
closed
3 months ago
2
fix: parameters not resolving properly when igenomes are used
#530
ramprasadn
closed
3 months ago
6
Test download cleanup
#529
ramprasadn
closed
3 months ago
1
Release 2.0.0
#528
ramprasadn
closed
3 months ago
7
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