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nf-core
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raredisease
Call and score variants from WGS/WES of rare disease patients.
https://nf-co.re/raredisease
MIT License
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34
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Container for get_chrom_sizes doesn't work
#567
Lucpen
closed
3 months ago
1
Stub run (and regular run) crashes on PEDDY
#566
Jakob37
closed
1 month ago
3
destination filesystem does not support xattrs
#565
hrydbeck
closed
2 months ago
3
Bigtools
#564
ramprasadn
opened
3 months ago
0
adds missinf citations for bwameme
#563
jemten
closed
3 months ago
1
typo
#562
EmelineFavreau
closed
3 months ago
2
refactor
#561
ramprasadn
closed
4 months ago
1
https://ai.marrvel.org / how to integrate to Scout and our analysis?
#560
fulyataylan
opened
4 months ago
5
updating meta.sex type check
#559
jemten
closed
4 months ago
1
update modules
#558
ramprasadn
closed
4 months ago
1
Resolve warnings
#557
ramprasadn
closed
4 months ago
2
Fix join issues in ME calling subworkflow
#556
ramprasadn
closed
4 months ago
4
Release 2.1.0
#555
ramprasadn
closed
4 months ago
1
ped file cannot be created when outdir is an s3 path
#554
evanfloden
opened
4 months ago
1
Add bwameme
#553
ramprasadn
closed
4 months ago
1
Skip mitochondrial analysis for WES
#552
ramprasadn
closed
4 months ago
1
Bwafallback
#551
ramprasadn
closed
4 months ago
1
changed valid values for the sex variable
#550
sima-r
closed
4 months ago
4
Error when 'other' is given as gender
#549
sima-r
closed
4 months ago
2
Template update v2.14.1
#548
ramprasadn
closed
4 months ago
1
Important! Template update for nf-core/tools v2.14.1
#547
nf-core-bot
closed
4 months ago
0
Important! Template update for nf-core/tools v2.14.0
#546
nf-core-bot
closed
4 months ago
1
Include "other" variants for CADD to analyse multallelic indels
#545
fa2k
closed
4 months ago
3
Multi-allelic indel sites don't get CADD scores for all alleles
#544
fa2k
closed
4 months ago
0
Bwa mem error
#543
rannick
closed
4 months ago
1
Join error ME_INDEX_SPLIT_ALIGNMENT
#542
fa2k
closed
4 months ago
10
adding explicit temps
#541
jemten
closed
5 months ago
1
could not open image Script8C84027CBF0BFB90846176A9D9C58EDE@30624c7
#540
hrydbeck
closed
4 months ago
1
Nextflow version requirement (documentation)
#539
fa2k
closed
5 months ago
1
Refactoring + other issues with cadd and samtools merge
#538
ramprasadn
closed
4 months ago
6
Error_during_installation
#537
vishramt7
opened
6 months ago
10
Patch release 2.0.1
#536
ramprasadn
closed
6 months ago
1
GATK4_GERMLINECNVCALLER modules don't emit .calls. Should be .cohortcalls or .casecalls?
#535
bnjvrjnke
closed
6 months ago
2
Update changelog
#534
ramprasadn
closed
6 months ago
1
Bumpversion 2.1.0dev
#533
ramprasadn
closed
6 months ago
1
update citations and bibliography
#532
ramprasadn
closed
6 months ago
1
Fix parameter's not resolving properly (Maxime)
#531
ramprasadn
closed
6 months ago
2
fix: parameters not resolving properly when igenomes are used
#530
ramprasadn
closed
6 months ago
6
Test download cleanup
#529
ramprasadn
closed
6 months ago
1
Release 2.0.0
#528
ramprasadn
closed
6 months ago
7
Release prep v2.0.0
#527
ramprasadn
closed
6 months ago
1
modules update
#526
ramprasadn
closed
6 months ago
1
Important! Template update for nf-core/tools v2.13.1
#525
nf-core-bot
closed
7 months ago
1
Normalize repeat expansions
#524
ramprasadn
closed
7 months ago
1
chromograph autozyg
#523
ramprasadn
closed
7 months ago
1
Fix samplenames in smncopynumbercaller
#522
ramprasadn
closed
7 months ago
1
Add option to annotate vcf2cytosure file with different(customer) ids
#521
ramprasadn
closed
7 months ago
1
URGENT: pin nf-validation version
#520
nvnieuwk
closed
6 months ago
2
Implementation of BWA
#519
lfearnley
closed
7 months ago
2
Template update v 2.13
#518
ramprasadn
closed
7 months ago
1
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