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nf-core
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raredisease
Call and score variants from WGS/WES of rare disease patients.
https://nf-co.re/raredisease
MIT License
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add fastp and ngsbits to multiqc input
#647
peterpru
closed
2 days ago
1
Update modules
#646
ramprasadn
closed
6 days ago
1
Mosdepth coverage report of WES regions
#645
sitems
opened
1 week ago
0
Add option to restrict analysis to specific contigs
#644
ramprasadn
closed
6 days ago
4
Upd fix
#643
jemten
closed
2 weeks ago
3
Error in UPD on single sample
#642
fa2k
closed
2 weeks ago
4
Germline or somatic
#641
beginner984
closed
2 weeks ago
2
VEP 113
#640
dnil
closed
3 weeks ago
3
Vep update to 113
#639
ramprasadn
closed
3 weeks ago
1
Fix fastqc samplenames in multiqc report
#638
ramprasadn
closed
3 weeks ago
1
Raredisease: Add fastp output to multiqc
#637
peterpru
closed
3 weeks ago
1
Use target bed files as regions instead of bait intervals for SNV calling in WES samples
#636
ramprasadn
closed
3 weeks ago
2
Merge germlinecnvcaller output
#635
ramprasadn
closed
4 weeks ago
1
GATK gCNV calls are not merged into a family VCF
#634
jemten
closed
4 weeks ago
0
add bait regions to deepvariant for WES
#633
ramprasadn
closed
1 month ago
3
ensure string comparison
#632
jemten
closed
1 month ago
1
Some SNV genome variants were found outside of --target_bed file with --bait_padding
#631
sitems
closed
2 weeks ago
3
Important! Template update for nf-core/tools v3.0.2
#630
nf-core-bot
closed
1 month ago
1
template update 3.0.1
#629
ramprasadn
closed
1 month ago
1
Important! Template update for nf-core/tools v3.0.1
#628
nf-core-bot
closed
1 month ago
0
Important! Template update for nf-core/tools v3.0.0
#627
nf-core-bot
closed
1 month ago
1
mosdepth error on dev branch
#626
fa2k
opened
1 month ago
3
Update genmod and multiqc
#625
ramprasadn
closed
1 month ago
1
Fix channel declaration error in the cadd subworkflow
#624
ramprasadn
closed
1 month ago
3
Update modules
#623
ramprasadn
closed
1 month ago
1
Update modules
#622
ramprasadn
closed
1 month ago
2
Invoke rhocallviz subworkflow only once per sample.
#621
ramprasadn
closed
1 month ago
1
Change output file prefix for upd and chromograph
#620
ramprasadn
closed
1 month ago
1
update modules
#619
ramprasadn
closed
1 month ago
1
Minor fixes
#618
ramprasadn
closed
1 month ago
1
allow vep 112
#617
jemten
closed
1 month ago
1
5% frequency threshold for mitochondrial clinical vcfs
#616
ramprasadn
closed
1 month ago
1
gnomAD v4.1 SV database contains mix of SV and CNV - svdb problem
#615
fa2k
opened
1 month ago
1
Split deepvariant pipeline
#614
fa2k
opened
1 month ago
1
Empty VCF file fails in genmod score
#613
fa2k
closed
1 month ago
1
Help with figuring out if error is pipeline or HPC related
#612
hrydbeck
opened
2 months ago
1
Test+Docker profile fails: Can't locate object method "cdna_coords"
#611
Oliversinn
closed
3 weeks ago
9
Bumpversion 2.2.0->2.3.0dev
#610
ramprasadn
closed
1 month ago
2
Updatevep from v110-112
#609
ramprasadn
closed
2 months ago
1
Add option to analyse only mitochondria
#608
ramprasadn
closed
1 month ago
2
Change platform description and update vcf2cytosure conditional
#607
ramprasadn
closed
2 months ago
1
Add option to generate csi index for managed variants
#606
ramprasadn
closed
2 months ago
1
Resolve issues that cropped up when aligner and mt_aligner were different
#605
ramprasadn
closed
2 months ago
1
Allow multiple unrelated cases/families in samplesheet.csv
#604
sitems
opened
2 months ago
1
ERROR ~ while scanning a simple key
#603
sitems
closed
1 month ago
5
Option to publish GVCFs
#602
sitems
opened
2 months ago
2
Updating Sentieon DNAscope ml-model
#601
asp8200
closed
2 months ago
1
bwamem2 for mt
#600
ramprasadn
closed
2 months ago
1
filter_vep broken with hg38
#599
fellen31
opened
3 months ago
1
Add option to supply bed file with PAR regions & enable haploid analysis for males
#598
ramprasadn
closed
3 months ago
2
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