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### Description of the bug
CheckQC fails for me on a flow cell after running bcl2fastq. It fails with
```
Command output:
Error: Empty JSON files. Most likely due to missing files in run di…
grst updated
3 months ago
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Using command `stub` blocks in Nextflow is useful when developing syntax and quickly testing pipelines. However, its use within nf-core is limited because the vast majority of nf-core modules do not h…
ewels updated
2 months ago
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`002_240524_A01303_0393_AH7YWCDRX5_CEN` doesn't have `multiqc_het-hom_analysis` in `report_saved_raw_data` as expected.
Instead it has `multiqc_het-hom_table`. No idea why couldn't find any indicatio…
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### Project short name:
RegulatoryMapPostnatalLung
_Part of Lung v2.0 atlas_
### Primary Wrangler:
Ida
### Secondary Wrangler:
Arsenios
### Associated files
* Google Drive: [folder](https://…
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# Background
New library construction technologies, especially highly multiplexed assays like single-cell RNA-seq, employ a large variety of library molecule configurations. These configurations inse…
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## Description
We are currently in an interim state between using to post-processing flows, and as part of that sample sheets are fetched from housekeeper instead of found in the flow cell/demux dire…
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### Description of feature
Hi!
We have an application to check if our sequencing runs fulfill certain (customisable) QC criteria after demultiplexing: https://github.com/Molmed/checkQC. We are co…
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### Description of feature
When using an Illumina Samplesheet with `Adapters` specified in the `[Settings]` section, bcl2fastq, cellranger mkfastq or BCLconvert automatically perform adapter trimming…
grst updated
3 months ago
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because reasons. also look for them to be named with either the sm tag OR the platform unit.
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Hi,
I am very much new to the Hashing method. I have got a 10x output using cellranger-arc (has both RNASEQ and ATCseq). I was told the samples are multiplexed using Biolegend hashing Ab and I h…