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**Packages that harmonize well:**
BBI (v0.2), BED (v0.3), BGZFStreams (v0.3), BigWig (v0.1), BioAlignments (v3), BioFetch (v0.2), BioGenerics (v0.1), BioSequences (v3), BioStructures (v2), Codecs (v…
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cc: @nh13
I have a set of sequence features with a position and counts value that I am visualizing with IGV. I'm currently loading the file as a `bedgraph`, so that I can see the count value assoc…
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Browser.search is only really suitable as a hook for the Browser chrome. A final API should:
```
- Return match data to the caller, rather than triggering immediate browser navigation.
…
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Seems there is a bug in the bed output from `modkit pileup`:
```
$ modkit --version
mod_kit 0.1.12
```
```
$ modkit pileup -n 4 --preset traditional -r ref.fasta methylated.ref.sorted.bam tes…
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Hi,
Your browser looks great
Could it support any Ensembl genomes for example http://fungi.ensembl.org/Schizosaccharomyces_pombe/Info/Index
Cheers,
Danny
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Right now HilbertGUI is hard-coded to use 2 files. It would be nice to support arbitrary numbers of files and generate all the necessary sliders for the GUI on the fly.
For example, it would be co…
daler updated
12 years ago
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Hi, I am trying to run feature extraction on bulk-ATAC-seq data, but I am met with this error:
```
Exception in thread "main" java.lang.reflect.InvocationTargetException
at java.base/jdk.in…
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These migrated from spreadsheet from hell
GEN format
Binary BED file format
SDF
MOL2
MOL
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Hi,
this is my hal2assemblyHub.py command
`hal2assemblyHub.py jobstore mAcoRus1.1_vs_mm10.hal mAcoRus1.1_vs_mm10_hub --lod --alignability --gcContent --cladeExclusiveRegions --maxCores 20 --hub mA…
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* Specific code commit: b9a3e9a
* Version of the web browser and OS: N/A
* Environment where the error occurred: any
### Steps to reproduce
Run a test suite, for example: `manage.py test file_se…